Browse Element(s) Details


OsAffx.29248.3.S1_x_at

Description tigr:9636.m01739
TID=OsAffx.29248.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1729411/11Partner of SLD five, PSF3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17200NANA8+10532145..10535134hypothetical protein
LOC_Os08g17210OsAffx.16467.1.S1_at9/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.2.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.6.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17220NANA8+10540185..10540709hypothetical protein
LOC_Os08g17230Os.26886.1.S1_x_at8/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17230Os.26886.3.S1_x_at5/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17240OsAffx.15648.1.S1_at1/118+10548266..10550175Zinc knuckle family protein
LOC_Os08g17250NANA8+10551321..10552016hypothetical protein
LOC_Os08g17259NANA8+10555029..10555852hypothetical protein
LOC_Os08g17270OsAffx.5851.1.S1_at11/118+10557821..10558236hypothetical protein
LOC_Os08g17294OsAffx.29248.3.S1_s_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.2.S1_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.3.S1_x_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294Os.18102.1.A1_at10/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29248.3.S1_x_at--116--8571Chr08:10560606..10560627 (22 bp)
TGGATACCGTCTTCCTGAGAGTCCG
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--116--7951Chr08:10560607..10560627 (21 bp)
GGATACCGTCTTCCTGAGAGTCCGC
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--1147--6471Chr08:10560608..10561005 (25 bp)
GATACCGTCTTCCTGAGAGTCCGCC
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--565--291Chr08:10560609..10561006 (25 bp)
ATACCGTCTTCCTGAGAGTCCGCCA
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--665--5952Chr08:10561375..10561399 (25 bp)
GAGCAACATCACAGCAACCGAGCAT
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--252--2092Chr08:10561380..10561404 (25 bp)
ACATCACAGCAACCGAGCATTCGAG
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--636--3412Chr08:10561386..10561410 (25 bp)
CAGCAACCGAGCATTCGAGCAACTG
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--571--4072Chr08:10561401..10561580 (25 bp)
CGAGCAACTGCAACGGTTTGAAACA
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--446--5952Chr08:10561402..10561581 (25 bp)
GAGCAACTGCAACGGTTTGAAACAT
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--673--5152Chr08:10561404..10561583 (25 bp)
GCAACTGCAACGGTTTGAAACATGA
LOC_Os08g17294
OsAffx.29248.3.S1_x_at--637--3252Chr08:10561405..10561584 (25 bp)
CAACTGCAACGGTTTGAAACATGAA
LOC_Os08g17294
Target Sequence 
TGGATACCGTCTTCCTGAGAGTCCGCCACGCCCACGCGTCGCAAGCCGCCGCCAGTCGACGCACGCGCCGACTGCGCCGT
CGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCTGCCCAGCCCGCTAGCCGCCTGCGCGCG
CCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAGACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCC
ACAGGCCACAGCCGGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTCCGCACCT
CGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTCGCGGCCTTCGGCCTCCCATCCTCGAGC
AACATCACAGCAACCGAGCATTCGAGCAACTGCAACGGTTTGAAACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29248.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis