Browse Element(s) Details


OsAffx.17052.1.S1_at

Description tigr:9636.m01797
TID=OsAffx.17052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T32E20.5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1785011/11hAT family dimerisation domain containing protein
LOC_Os03g289509/11AC transposase, putative
LOC_Os11g182202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein
LOC_Os08g17880OsAffx.17054.1.S1_at11/118+10964219..10965351hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17052.1.S1_at--575--10173Chr08:10943860..10943884 (25 bp)
TATAAGGCTGAACCATCCCTGTTGG
LOC_Os08g17850
OsAffx.17052.1.S1_at--259--1732Chr08:10943871..10943895 (25 bp)
ACCATCCCTGTTGGTTCCTAATGGA
LOC_Os08g17850
OsAffx.17052.1.S1_at--30--6812Chr08:10943908..10943932 (25 bp)
GTTTTGTCATGGTGGAAAGCTCACA
LOC_Os08g17850
OsAffx.17052.1.S1_at--106--2352Chr08:10943923..10943947 (25 bp)
AAAGCTCACAAAGATGTATATCCAG
LOC_Os08g17850
OsAffx.17052.1.S1_at--194--6892Chr08:10943938..10943962 (25 bp)
GTATATCCAGTGCTATCTCTTCTTG
LOC_Os08g17850
OsAffx.17052.1.S1_at--622--10552Chr08:10943957..10943981 (25 bp)
TTCTTGCCCGCGATGTCTTGTCCAT
LOC_Os08g17850
OsAffx.17052.1.S1_at--464--6273Chr08:10943968..10943992 (25 bp)
GATGTCTTGTCCATTCAAGCTTCCA
LOC_Os08g17850
OsAffx.17052.1.S1_at--794--9512Chr08:10944033..10944057 (25 bp)
TCTTGATCCATTTCGTACTAAACTT
LOC_Os08g17850
OsAffx.17052.1.S1_at--935--6992Chr08:10944047..10944071 (25 bp)
GTACTAAACTTGAACCTGAAATGGT
LOC_Os08g17850
OsAffx.17052.1.S1_at--22--2312Chr08:10944065..10944089 (25 bp)
AAATGGTAGAAGCACTAGTCTGTAC
LOC_Os08g17850
OsAffx.17052.1.S1_at--458--1491Chr08:10944075..10944099 (25 bp)
AGCACTAGTCTGTACCAAGGATTGG
LOC_Os08g17850
Target Sequence 
TATAAGGCTGAACCATCCCTGTTGGTTCCTAATGGAGATAAATTTGATGTTTTGTCATGGTGGAAAGCTCACAAAGATGT
ATATCCAGTGCTATCTCTTCTTGCCCGCGATGTCTTGTCCATTCAAGCTTCCACTGTTGCTTCAGAATCAGCTTTTAGTG
CTGGGGGACGTGTTCTTGATCCATTTCGTACTAAACTTGAACCTGAAATGGTAGAAGCACTAGTCTGTACCAAGGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis