Browse Element(s) Details


OsAffx.17070.1.S1_at

Description tigr:9636.m01897
TID=OsAffx.17070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1933011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19300OsAffx.20020.1.S1_x_at3/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19300OsAffx.15695.1.S1_x_at2/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19310NANA8+11546177..11548597hypothetical protein
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed
LOC_Os08g19330OsAffx.17070.1.S1_at11/118+11557838..11558821hypothetical protein
LOC_Os08g19340OsAffx.29275.1.S1_at10/118+11561047..11562701expressed protein
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17070.1.S1_at--20--9211Chr08:11558266..11558290 (25 bp)
TGCCAGCTTCCTGCGCAAGGAGGAG
LOC_Os08g19330
OsAffx.17070.1.S1_at--770--1571Chr08:11558296..11558320 (25 bp)
AGCTCAAGCTGCAGGATTAACTCCG
LOC_Os08g19330
OsAffx.17070.1.S1_at--496--8951Chr08:11558305..11558329 (25 bp)
TGCAGGATTAACTCCGCCGCAACCG
LOC_Os08g19330
OsAffx.17070.1.S1_at--903--4151Chr08:11558319..11558343 (25 bp)
CGCCGCAACCGGAGGAGAACAACAC
LOC_Os08g19330
OsAffx.17070.1.S1_at--234--4231Chr08:11558327..11558351 (25 bp)
CCGGAGGAGAACAACACCGCCGTCG
LOC_Os08g19330
OsAffx.17070.1.S1_at--1031--8171Chr08:11558383..11558407 (25 bp)
GGAAGCTGCAGTAACAACTCCGCCG
LOC_Os08g19330
OsAffx.17070.1.S1_at--817--7371Chr08:11558534..11558558 (25 bp)
GTGACGCTGGTGCACCTGCGCGGCG
LOC_Os08g19330
OsAffx.17070.1.S1_at--1077--3931Chr08:11558567..11558591 (25 bp)
CGGCTGCTGCTGACGCGGTGGGACA
LOC_Os08g19330
OsAffx.17070.1.S1_at--724--9331Chr08:11558637..11558661 (25 bp)
TCGCCCGGTGCGGCATCAAGGAGAA
LOC_Os08g19330
OsAffx.17070.1.S1_at--897--4011Chr08:11558665..11558689 (25 bp)
CGTCGTCCATGTCTGGGCCTTCAAG
LOC_Os08g19330
OsAffx.17070.1.S1_at--373--751Chr08:11558673..11558697 (25 bp)
ATGTCTGGGCCTTCAAGCAGCAGGG
LOC_Os08g19330
Target Sequence 
TGCCAGCTTCCTGCGCAAGGAGGAGGATGAAGCTCAAGCTGCAGGATTAACTCCGCCGCAACCGGAGGAGAACAACACCG
CCGTCGTCGTGGAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGCTGCAGTAACAACTCCGCCGCAACCGGAGAGCGACACC
GCCGTCGCCGTCGCGGAGCAGCAGCAGCAGCAGGAGGAGGAGGAGACGGCGGGGCCGGGCGGGAGGAAGAAGAAGAAGAA
GAAGGGGAGGTCGCACGGCGGGCTGCCGGTGACGCTGGTGCACCTGCGCGGCGGCATGAAGCGGCTGCTGCTGACGCGGT
GGGACAGCAGCGGCGCCGCCATCATCAAGGGGGAAGGCTACCTCGACTTCATCGCCCGGTGCGGCATCAAGGAGAAGGAC
GTCGTCCATGTCTGGGCCTTCAAGCAGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis