Browse Element(s) Details


Os.5762.3.S1_at

Description gb:AK066894.1
DB_XREF= gi:32976912
TID=Os.5762.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089O21, full insert sequence.
FL= gb:AK066894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1937411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed
LOC_Os08g19330OsAffx.17070.1.S1_at11/118+11557838..11558821hypothetical protein
LOC_Os08g19340OsAffx.29275.1.S1_at10/118+11561047..11562701expressed protein
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19380OsAffx.17071.1.S1_at10/118+11589002..11589581hypothetical protein
LOC_Os08g19380Os.55476.1.S1_at1/118+11589002..11589581hypothetical protein
LOC_Os08g19390NANA8+11590651..11591933retrotransposon protein, putative, unclassified
LOC_Os08g19400Os.28943.1.S1_x_at4/118+11592553..11593987retrotransposon protein, putative, unclassified
LOC_Os08g19410Os.6270.1.S1_at3/118+11596891..11597299NAF domain containing protein
LOC_Os08g19420Os.23482.1.S1_at11/118+11601048..11602472O-methyltransferase family protein, expressed
LOC_Os08g19440OsAffx.1646.1.S1_x_at1/118+11607169..11608996retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5762.3.S1_at--1107--712Chr08:11582765..11582789 (25 bp)
ATGATCTCTGCAGGTTATCGACTCT
LOC_Os08g19374
Os.5762.3.S1_at--759--992Chr08:11582776..11582800 (25 bp)
AGGTTATCGACTCTGGGAATACCAA
LOC_Os08g19374
Os.5762.3.S1_at--1061--7592Chr08:11582790..11582814 (25 bp)
GGGAATACCAACTCAAGTTTGCTTG
LOC_Os08g19374
Os.5762.3.S1_at--232--1211Chr08:11582805..11582829 (25 bp)
AGTTTGCTTGCCAACAGCATTGTGG
LOC_Os08g19374
Os.5762.3.S1_at--558--9592Chr08:11582859..11582883 (25 bp)
TCATTGACTTATTTTTTCCTTGAAT
LOC_Os08g19374
Os.5762.3.S1_at--582--12Chr08:11582918..11582942 (25 bp)
ATCTCCCTTTTCTCTACCGAATAGG
LOC_Os08g19374
Os.5762.3.S1_at--373--252Chr08:11582959..11582983 (25 bp)
ATATCTACCATTGATCCATGATGGA
LOC_Os08g19374
Os.5762.3.S1_at--380--8972Chr08:11582994..11583018 (25 bp)
TGAAAGTTCATTTTGTACGCTGCAT
LOC_Os08g19374
Os.5762.3.S1_at--534--3872Chr08:11583146..11583170 (25 bp)
CTGTCAGAAGAAGTATTGCCGATTT
LOC_Os08g19374
Os.5762.3.S1_at--483--8951Chr08:11583179..11583203 (25 bp)
TGACTTCTCATACATTCCATCTTAA
LOC_Os08g19374
Os.5762.3.S1_at--419--10332Chr08:11583204..11583228 (25 bp)
TTTCATATTGAGTAGATCGTTGCCA
LOC_Os08g19374
Target Sequence 
ATGATCTCTGCAGGTTATCGACTCTGGGAATACCAACTCAAGTTTGCTTGCCAACAGCATTGTGGAACAAAATACTATAT
TTATCTGTATATGTTCATTGACTTATTTTTTCCTTGAATTTCAGTTATGCTTATTCATTACAAAAATGTTTGCATCTCCC
TTTTCTCTACCGAATAGGCACATTTAAATAAACCATATCTACCATTGATCCATGATGGAAATAATGTATTGAAAGTTCAT
TTTGTACGCTGCATTTTTTGTTGTTTAAAGGTTATAAATTTCATTACATTAATCATTATCTTGCACTAATATGTTGCAGA
AAAATATCCGTTGTTGAGAAGATTTAACACAGGGTCTTATTCCAAGAGGTGTGTTCTGCTGCTGTCAGAAGAAGTATTGC
CGATTTATAAGAATTGACTTCTCATACATTCCATCTTAATTTCATATTGAGTAGATCGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5762.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis