Browse Element(s) Details


OsAffx.17071.1.S1_at

Description tigr:9636.m01903
TID=OsAffx.17071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1938010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19380OsAffx.17071.1.S1_at10/118+11589002..11589581hypothetical protein
LOC_Os08g19380Os.55476.1.S1_at1/118+11589002..11589581hypothetical protein
LOC_Os08g19390NANA8+11590651..11591933retrotransposon protein, putative, unclassified
LOC_Os08g19400Os.28943.1.S1_x_at4/118+11592553..11593987retrotransposon protein, putative, unclassified
LOC_Os08g19410Os.6270.1.S1_at3/118+11596891..11597299NAF domain containing protein
LOC_Os08g19420Os.23482.1.S1_at11/118+11601048..11602472O-methyltransferase family protein, expressed
LOC_Os08g19440OsAffx.1646.1.S1_x_at1/118+11607169..11608996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_at4/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.45173.1.S1_x_at3/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_x_at2/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.38764.1.S1_x_at1/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17071.1.S1_at--307--4711Chr08:11589488..11589512 (25 bp)
GCGGCGCTGCACAGTCATGCGCAAG
LOC_Os08g19380
OsAffx.17071.1.S1_at--64--1171Chr08:11589476..11589500 (25 bp)
AGTCATGCGCAAGGGCCAAGGCCGT
LOC_Os08g19380
OsAffx.17071.1.S1_at--418--1091Chr08:11589465..11589489 (25 bp)
AGGGCCAAGGCCGTCACGATGCAAC
LOC_Os08g19380
OsAffx.17071.1.S1_at--426--2951Chr08:11589459..11589483 (25 bp)
AAGGCCGTCACGATGCAACGGAGGT
LOC_Os08g19380
OsAffx.17071.1.S1_at--183--1891Chr08:11589450..11589474 (25 bp)
ACGATGCAACGGAGGTGGCGCCAGA
LOC_Os08g19380
OsAffx.17071.1.S1_at--868--6171Chr08:11589421..11589445 (25 bp)
GAGGAGAGGTTGTGCCGGCACGGTT
LOC_Os08g19380
OsAffx.17071.1.S1_at--999--4011Chr08:11589380..11589404 (25 bp)
CGTCGTGGCGAGGAATGTGGCGGCT
LOC_Os08g19380
OsAffx.17071.1.S1_at--966--2971Chr08:11589367..11589391 (25 bp)
AATGTGGCGGCTGTGCGGGAGCCAA
LOC_Os08g19380
OsAffx.17071.1.S1_at--970--911Chr08:11589087..11589358 (25 bp)
AGGCTTGCAGTGAAGGGCTTAGTTC
LOC_Os08g19380
OsAffx.17071.1.S1_at--112--5291NONE
GAAGGGCTTAGTTCTATTAATCTAG
NONE
OsAffx.17071.1.S1_at--301--6311Chr08:11589040..11589064 (25 bp)
GATGAACTGGATCATATTTTCACAG
LOC_Os08g19380
Target Sequence 
GCGGCGCTGCACAGTCATGCGCAAGGGCCAAGGCCGTCACGATGCAACGGAGGTGGCGCCAGAGCTGGAGGAGAGGTTGT
GCCGGCACGGTTGGGCAGCGTCGGTCGCCGTCGTGGCGAGGAATGTGGCGGCTGTGCGGGAGCCAACGACGGCGAGGCTT
GCAGTGAAGGGCTTAGTTCTATTAATCTAGGAATATTTATAGATGAACTGGATCATATTTTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis