Browse Element(s) Details


Os.14355.1.S1_at

Description gb:AK073404.1
DB_XREF= gi:32983427
TID=Os.14355.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043G13, full insert sequence.
FL= gb:AK073404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1932011/11Aberrant root formation protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19280OsAffx.22629.1.S1_at2/118+11527822..11529411hypothetical protein
LOC_Os08g19280OsAffx.13987.1.S1_at1/118+11527822..11529411hypothetical protein
LOC_Os08g19290OsAffx.29274.1.S1_at11/118+11531910..11532557hypothetical protein
LOC_Os08g19300OsAffx.20020.1.S1_x_at3/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19300OsAffx.15695.1.S1_x_at2/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19310NANA8+11546177..11548597hypothetical protein
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed
LOC_Os08g19330OsAffx.17070.1.S1_at11/118+11557838..11558821hypothetical protein
LOC_Os08g19340OsAffx.29275.1.S1_at10/118+11561047..11562701expressed protein
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010102biological_processlateral root morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14355.1.S1_at--778--8451Chr08:11553892..11553916 (25 bp)
TGGCGAATGGCCACCACCTTGGTTT
LOC_Os08g19320
Os.14355.1.S1_at--698--3371Chr08:11553878..11553902 (25 bp)
CACCTTGGTTTTCTCATGCACTTGA
LOC_Os08g19320
Os.14355.1.S1_at--548--10691Chr08:11553837..11553861 (25 bp)
TTGAAGCCTCCAGAAGGTGGCCCTC
LOC_Os08g19320
Os.14355.1.S1_at--1135--7431Chr08:11552400..11552424 (25 bp)
GTGTACTCAGAGTGGCTGATGCCAT
LOC_Os08g19320
Os.14355.1.S1_at--1032--8331Chr08:11552387..11552411 (25 bp)
GGCTGATGCCATTAAGACCAATTGT
LOC_Os08g19320
Os.14355.1.S1_at--131--7851Chr08:11552331..11552355 (25 bp)
GGTAGCGACGTTGCAAATCATATCA
LOC_Os08g19320
Os.14355.1.S1_at--546--411Chr08:11552310..11552334 (25 bp)
ATCATGTGCTCGTTAAATCCTGTTC
LOC_Os08g19320
Os.14355.1.S1_at--468--51Chr08:11552278..11552302 (25 bp)
ATTGTACCGCTGCATTGAGCTGGCA
LOC_Os08g19320
Os.14355.1.S1_at--1156--7731Chr08:11552238..11552262 (25 bp)
GGTTTCTAACGTTTTCAGTTCACTG
LOC_Os08g19320
Os.14355.1.S1_at--303--3451Chr08:11552223..11552247 (25 bp)
CAGTTCACTGGTTTTTGTACAATAT
LOC_Os08g19320
Os.14355.1.S1_at--1050--7031Chr08:11552207..11552231 (25 bp)
GTACAATATACTGCTGTCTCGAGGC
LOC_Os08g19320
Target Sequence 
TGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTC
CTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGA
TCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGT
TGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAAT
TAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAANATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACA
ATATACTGCTGTCTCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis