Browse Element(s) Details


OsAffx.17097.1.S1_at

Description tigr:9636.m02109
TID=OsAffx.17097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2157011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21520Os.54774.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520OsAffx.25367.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520Os.54774.1.S1_x_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21530OsAffx.17096.1.S1_at11/118+12824503..12824934hypothetical protein
LOC_Os08g21540NANA8+12825911..12826333hypothetical protein
LOC_Os08g21554OsAffx.29296.1.S1_at10/118+12833246..12835701hypothetical protein
LOC_Os08g21570OsAffx.17097.1.S1_at11/118+12837551..12841490pentatricopeptide, putative, expressed
LOC_Os08g21580Os.3640.1.S1_at7/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21580OsAffx.25746.1.S1_x_at1/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21590Os.49809.1.S1_x_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.1.S1_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.2.S1_at10/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.48015.1.A1_x_at2/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.38764.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17097.1.S1_at--333--5451Chr08:12839989..12840013 (25 bp)
GAACGTTGACCTTGCTATGGGCGTA
LOC_Os08g21570
OsAffx.17097.1.S1_at--655--5831Chr08:12840139..12840163 (25 bp)
GACCTGGAATCCTGATGACGTTGTA
LOC_Os08g21570
OsAffx.17097.1.S1_at--90--8951Chr08:12840154..12840178 (25 bp)
TGACGTTGTACAGGCAGTGCTCATC
LOC_Os08g21570
OsAffx.17097.1.S1_at--167--4831Chr08:12840172..12840196 (25 bp)
GCTCATCGATGGATTGCTCAGGGAT
LOC_Os08g21570
OsAffx.17097.1.S1_at--482--2371Chr08:12840237..12840261 (25 bp)
AAACCAGACGTTACATGCCTAGCTT
LOC_Os08g21570
OsAffx.17097.1.S1_at--613--9171Chr08:12840252..12840276 (25 bp)
TGCCTAGCTTCCATATATACACCAT
LOC_Os08g21570
OsAffx.17097.1.S1_at--286--2151Chr08:12840270..12840294 (25 bp)
ACACCATTTTGGCTAGGGAGGCATC
LOC_Os08g21570
OsAffx.17097.1.S1_at--611--1071Chr08:12840631..12840655 (25 bp)
AGGGCTACATGCTCTACATCGTGTA
LOC_Os08g21570
OsAffx.17097.1.S1_at--36--1131Chr08:12840662..12840686 (25 bp)
AGTGCTTCTGTTCAAGTCTTTCCAG
LOC_Os08g21570
OsAffx.17097.1.S1_at--592--7151Chr08:12840677..12841054 (25 bp)
GTCTTTCCAGATTGTACTACCTTTA
LOC_Os08g21570
OsAffx.17097.1.S1_at--697--5471Chr08:12841339..12841363 (25 bp)
GAACTCTATGCGAAGGCTTGCTTGT
LOC_Os08g21570
Target Sequence 
GAACGTTGACCTTGCTATGGGCGTATTTAAGCATATGTCTACTCAAGGTTGTGAGGTCCACCTTAATGGTTATAAAGAAT
TAATATGTGCTTTATGCCAATTACACAGAAGAAAGGAAGCCCGGATTACTTTTGAAAACATGCTCATGAGGACCTGGAAT
CCTGATGACGTTGTACAGGCAGTGCTCATCGATGGATTGCTCAGGGATGGATACAAAGACTTGTGCATGGAATTTCTGCA
CATAATGGAAACCAGACGTTACATGCCTAGCTTCCATATATACACCATTTTGGCTAGGGAGGCATCAAAAAAGAGGTCAT
GGAAACATGTAGCAGGATGTATCACAAAGGTGAAGAGGGCTACATGCTCTACATCGTGTACAGGACAGTGCTTCTGTTCA
AGTCTTTCCAGATTGTACTACCTTTATCCCATAAAAATTGAAATTCTAGCTAATTTAGGACAGATAATAACAACCAATGG
AAGGGAACTCTATGCGAAGGCTTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis