Browse Element(s) Details


OsAffx.17101.1.S1_at

Description tigr:9636.m02130
TID=OsAffx.17101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21760Os.26760.1.A1_at11/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21760OsAffx.5892.1.S1_at10/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21770NANA8+12994697..12998846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21780NANA8+12999660..13001544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21790NANA8+13003127..13006000hypothetical protein
LOC_Os08g21800NANA8+13006829..13010601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21804Os.52447.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804OsAffx.13218.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804Os.52447.1.S1_x_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein
LOC_Os08g21820OsAffx.29299.1.S1_at11/118+13018727..13019881hypothetical protein
LOC_Os08g21830OsAffx.29300.1.S1_at11/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_x_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17101.1.S1_at--1016--6071Chr08:13016980..13017004 (25 bp)
GAGTATGAAGTTCACTGCTCCTGTT
LOC_Os08g21810
OsAffx.17101.1.S1_at--487--2551Chr08:13016881..13016905 (25 bp)
AACTCCTCGTTCCTATGTTGATGAG
LOC_Os08g21810
OsAffx.17101.1.S1_at--1045--6511Chr08:13016806..13016830 (25 bp)
GATATTCTTTTTCCCAAGTTGTACA
LOC_Os08g21810
OsAffx.17101.1.S1_at--422--3071Chr08:13016702..13016726 (25 bp)
AATCTTGTGCAGGTGTATCATACAT
LOC_Os08g21810
OsAffx.17101.1.S1_at--784--5611Chr08:13016676..13016700 (25 bp)
GACACTCGCAACATGGCAATAAACG
LOC_Os08g21810
OsAffx.17101.1.S1_at--506--9511Chr08:13016657..13016681 (25 bp)
TAAACGAACACGAAGGTCCAACATC
LOC_Os08g21810
OsAffx.17101.1.S1_at--906--2551Chr08:13016593..13016617 (25 bp)
AACTGGGTATGCACCCAGATGGACT
LOC_Os08g21810
OsAffx.17101.1.S1_at--814--7771Chr08:13016544..13016568 (25 bp)
GGTTCGCCCCGGCAGAATACCAGCG
LOC_Os08g21810
OsAffx.17101.1.S1_at--642--5231Chr08:13016530..13016554 (25 bp)
GAATACCAGCGAGAACCGGTGGCAA
LOC_Os08g21810
OsAffx.17101.1.S1_at--142--4031Chr08:13016469..13016493 (25 bp)
CGTTCTCCCAGTTCAAGTGGCAATG
LOC_Os08g21810
OsAffx.17101.1.S1_at--1008--3011Chr08:13016448..13016472 (25 bp)
AATGCCTCCGTTCTCCAACTGGTGG
LOC_Os08g21810
Target Sequence 
GAGTATGAAGTTCACTGCTCCTGTTGAGTGCAGTTCTCTGATTACTCGCATAGAGAACGGGCTTGGGGTGATTTCTAATG
ATCAAATTGCTTATATTTCAACTCCTCGTTCCTATGTTGATGAGTCTTATCTAGTGCAAGGTCATATACTTAAATATGGA
GTAGATGGTTCTTTGATATTCTTTTTCCCAAGTTGTACAAATGAAATCCCATTACCTAACCCGGGGTATCATTTGTACAA
CTGTCATGAGCTAACCATTCCCCTGCAGACCATAGAAGAATCTTGTGCAGGTGTATCATACATGGACACTCGCAACATGG
CAATAAACGAACACGAAGGTCCAACATCCTCAACACCCATGCAGATGTATGAGGATGACTGGGAGCCAACTGGGTATGCA
CCCAGATGGACTCAAGCTCCACACCACAACACCGGAGGTTCGCCCCGGCAGAATACCAGCGAGAACCGGTGGCAAGCACC
TCAGGATGTGCAATGGGGAAACATGAACTCCCGTTCTCCCAGTTCAAGTGGCAATGCCTCCGTTCTCCAACTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis