Browse Element(s) Details


OsAffx.17106.1.S1_x_at

Description tigr:9636.m02186
TID=OsAffx.17106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g224407/11hypothetical protein
LOC_Os01g410801/11retrotransposon protein, putative, unclassified
LOC_Os12g063701/11retrotransposon protein, putative, unclassified
LOC_Os07g378701/11hypothetical protein
LOC_Os03g486901/11retrotransposon protein, putative, unclassified
LOC_Os08g340801/11retrotransposon protein, putative, unclassified
LOC_Os09g278001/11retrotransposon protein, putative, unclassified
LOC_Os06g351901/11retrotransposon protein, putative, unclassified
LOC_Os12g324301/11retrotransposon protein, putative, unclassified
LOC_Os12g084401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22400OsAffx.31177.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400Os.52238.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400OsAffx.7216.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400OsAffx.31892.5.S1_x_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22410NANA8+13390006..13393006retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22420NANA8+13393668..13398590retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22430OsAffx.20387.1.S1_x_at2/118+13401499..13404690transposon protein, putative, unclassified
LOC_Os08g22440OsAffx.17106.1.S1_at9/118+13406473..13407051hypothetical protein
LOC_Os08g22440OsAffx.17106.1.S1_x_at7/118+13406473..13407051hypothetical protein
LOC_Os08g22450NANA8+13409161..13409688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22460NANA8+13411825..13412529NA
LOC_Os08g22480OsAffx.18275.2.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.18275.1.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.18275.2.S1_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.13786.1.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22500NANA8+13422844..13425225retrotransposon protein, putative, unclassified
LOC_Os08g22510NANA8+13426097..13428875hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17106.1.S1_x_at--861--7491Chr08:13408816..13408840 (25 bp)
GTGGTCCCACTACGGCGAGCAACGT
NONE
OsAffx.17106.1.S1_x_at--911--9199Chr12:4290231..4290584 (25 bp)
TGCCATCAATGCCTCGGATGCGTCT
LOC_Os12g08440
OsAffx.17106.1.S1_x_at--604--4791Chr08:13407181..13407312 (25 bp)
GCTCGACGAGAACGCGTCTCCTGCC
NONE
OsAffx.17106.1.S1_x_at--858--1671Chr08:13407097..13407121 (25 bp)
AGCCGGCGATCCCTCGGCTGGTCGG
NONE
OsAffx.17106.1.S1_x_at--820--551Chr08:13406802..13406826 (25 bp)
ATCCGTGGCTCGTTTCGGGTGACCA
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--647--4251Chr08:13406800..13406824 (25 bp)
CCGTGGCTCGTTTCGGGTGACCAAT
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--468--8291Chr08:13406796..13406820 (25 bp)
GGCTCGTTTCGGGTGACCAATACTG
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--876--4211Chr08:13406795..13406819 (25 bp)
GCTCGTTTCGGGTGACCAATACTGG
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--210--3791Chr08:13406794..13406818 (25 bp)
CTCGTTTCGGGTGACCAATACTGGT
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--992--10291Chr08:13406790..13406814 (25 bp)
TTTCGGGTGACCAATACTGGTCTGC
LOC_Os08g22440
OsAffx.17106.1.S1_x_at--840--9411Chr08:13406788..13406812 (25 bp)
TCGGGTGACCAATACTGGTCTGCAC
LOC_Os08g22440
Target Sequence 
GTGGTCCCACTACGGCGAGCAACGTCCCCGTGCCCCTTTCCGAGAAAGGGGCGGCCGAGCGCGACGCTGCCATCAATGCC
TCGGATGCGTCTCCCCCGCCTCCGCGACGGCAGCGGCTTGTGACGCTCGACGAGAACGCGTCTCCTGCCGTGGCCTCGAC
AGATGTCGTGGTCGTACCCAGGAGCCGCGAGGTGACGCCGAGCGGCCCAGCCGGCGATCCCTCGGCTGGTCGGGGTCCGT
CGACTGCCGTCCTCACATGGGAGGAGCTCCAGGTCGAGATGGGGTGCCTCCTCGAGGCTGGTGCTCGCGGTGTTAGCCAC
GAGATTGCGGAGGCGAGGGCAGCGGCTGCGTCGTCGGCGAACGAGCGCACCGATCGGCTGGCGCGCGATCTGGCGGAGGT
TCGCGAGGACCTCCAGAAGATGAGGGAACTAGTGGCCGGCAACGAGCGACAATGGCAGGGGTTCGAGCACCGCATGTCGG
AGCTCGAGAACAACTTGTCGGAAATCCGTGGCTCGTTTCGGGTGACCAATACTGGTCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17106.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis