Browse Element(s) Details


OsAffx.17115.1.S1_at

Description tigr:9636.m02302
TID=OsAffx.17115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23540Os.48015.1.A1_x_at1/118+14117945..14120185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23550OsAffx.29318.1.S1_at11/118+14122871..14123188hypothetical protein
LOC_Os08g23560OsAffx.5904.1.S1_at11/118+14125457..14126229hypothetical protein
LOC_Os08g23570OsAffx.5905.1.S1_at10/118+14127657..14130663B3 DNA binding domain containing protein
LOC_Os08g23580Os.47463.1.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.14491.2.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.13304.1.S1_at2/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.27037.1.A1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.5804.1.S1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23590OsAffx.17115.1.S1_at11/118+14143913..14150421hypothetical protein
LOC_Os08g23590Os.53409.1.A1_at1/118+14143913..14150421hypothetical protein
LOC_Os08g23600OsAffx.29319.1.S1_at10/118+14155196..14156372hypothetical protein
LOC_Os08g23610OsAffx.24330.2.S1_at1/118+14157942..14160773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620OsAffx.30891.1.S1_x_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47004.1.S1_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.45173.1.S1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47999.2.A1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17115.1.S1_at--485--1551Chr08:14147406..14147430 (25 bp)
AGCTTATGTTGACCCGTTATCTGAC
LOC_Os08g23590
OsAffx.17115.1.S1_at--13--4251Chr08:14147393..14147417 (25 bp)
CCGTTATCTGACTGTGGGACACCAT
LOC_Os08g23590
OsAffx.17115.1.S1_at--357--2172Chr12:23919942..23919964 (22 bp)
ACACCATTACATCTTGCTGCTACTG
NONE
OsAffx.17115.1.S1_at--1046--7851Chr08:14146832..14146856 (25 bp)
GGTATGACACCTCTCTTTGTTGCTA
LOC_Os08g23590
OsAffx.17115.1.S1_at--628--6671Chr08:14146814..14146838 (25 bp)
GTTGCTATAAATCATGCCTCAGAAA
LOC_Os08g23590
OsAffx.17115.1.S1_at--352--2432Chr12:22257749..22257840 (24 bp)
AAAATGCGCGAAGCTCCTGGTTAAG
NONE
OsAffx.17115.1.S1_at--1076--6471Chr08:14146100..14146124 (25 bp)
GATACTTCGTTCAACTCAGTGTTTG
LOC_Os08g23590
OsAffx.17115.1.S1_at--340--1171Chr08:14144687..14144711 (25 bp)
AGTCACTAGGGAGTATGGCGTTCCA
LOC_Os08g23590
OsAffx.17115.1.S1_at--629--1431Chr08:14144657..14144681 (25 bp)
AGAACTATCTTCATGCTGCAGGATT
LOC_Os08g23590
OsAffx.17115.1.S1_at--355--8291Chr08:14143998..14144022 (25 bp)
GGCATTGGCTGATTTCTAAGATTCT
LOC_Os08g23590
OsAffx.17115.1.S1_at--501--9011Chr08:14143959..14143983 (25 bp)
TGAATTCCCTGAGTGCATCTGGGCT
LOC_Os08g23590
Target Sequence 
AGCTTATGTTGACCCGTTATCTGACTGTGGGACACCATTACATCTTGCTGCTACTGAAGGGCAGGATGGTACCATGAAGA
TATTGTTGGACCACAAAGCGGATTACAACAAGATGGTACTTGGTATGACACCTCTCTTTGTTGCTATAAATCATGCCTCA
GAAAAATGCGCGAAGCTCCTGGTTAAGGCTGGTGCTGATATCAATGGAGATTATGTGTTAACAGCTTTAACTGATACTTC
GTTCAACTCAGTGTTTGCATTGCTTACTGGAAGGGGAGCACCTGTGAGTAGAAGTATAACAGAGTTAAAGTCACTAGGGA
GTATGGCGTTCCAGAGCAAGAACTATCTTCATGCTGCAGGATTCTACAGTAAGATTTTGATATGGCATTGGCTGATTTCT
AAGATTCTTGGTCAAGGGACAGTGAATTCCCTGAGTGCATCTGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis