Browse Element(s) Details


OsAffx.17156.1.S1_at

Description tigr:9636.m02531
TID=OsAffx.17156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2577010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25820OsAffx.5926.1.S1_at11/118+15579312..15583536transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17156.1.S1_at--794--8731Chr08:15554602..15554626 (25 bp)
TGTCATGAGGGCGAAGTCTTTGTAC
LOC_Os08g25770
OsAffx.17156.1.S1_at--689--5331Chr08:15554614..15554638 (25 bp)
GAAGTCTTTGTACTATGGGCCCAGC
LOC_Os08g25770
OsAffx.17156.1.S1_at--16--9551Chr08:15554618..15554642 (25 bp)
TCTTTGTACTATGGGCCCAGCCAGA
LOC_Os08g25770
OsAffx.17156.1.S1_at--870--10651Chr08:15554647..15554671 (25 bp)
TTCCCTGAGACCATCTCTATCGCAG
LOC_Os08g25770
OsAffx.17156.1.S1_at--103--6011Chr08:15554653..15554677 (25 bp)
GAGACCATCTCTATCGCAGCGCCGT
LOC_Os08g25770
OsAffx.17156.1.S1_at--432--9091NONE
TGCTCATCATCAAGTGGTCCGCATG
NONE
OsAffx.17156.1.S1_at--532--2871Chr08:15555564..15555584 (21 bp)
AAGTGGTCCGCATGTGCTTCCAGGA
LOC_Os08g25770
OsAffx.17156.1.S1_at--997--4951Chr08:15555569..15555593 (25 bp)
GCATGTGCTTCCAGGACTTCGACGG
LOC_Os08g25770
OsAffx.17156.1.S1_at--1078--1451Chr08:15555596..15555620 (25 bp)
AGAAGATCGGCATGCCATTGTCTAC
LOC_Os08g25770
OsAffx.17156.1.S1_at--1098--11Chr08:15555612..15555636 (25 bp)
ATTGTCTACAGGATGGACCACTTCA
LOC_Os08g25770
OsAffx.17156.1.S1_at--496--10871Chr08:15555650..15555674 (25 bp)
TTGGCGCACGGTGTGCGACATCCCA
LOC_Os08g25770
Target Sequence 
TGTCATGAGGGCGAAGTCTTTGTACTATGGGCCCAGCCAGACCCCTTCCCTGAGACCATCTCTATCGCAGCGCCGTCTCA
CTGCCATGCTCATCATCAAGTGGTCCGCATGTGCTTCCAGGACTTCGACGGCAAGAAGATCGGCATGCCATTGTCTACAG
GATGGACCACTTCAACGAGTCGCCGGCTTGGCGCACGGTGTGCGACATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis