Browse Element(s) Details


OsAffx.17215.1.S1_at

Description tigr:9636.m02852
TID=OsAffx.17215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2881010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28760NANA8+17460906..17463748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28770NANA8+17465103..17470360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g28780OsAffx.5970.1.S1_at11/118+17471719..17472278Skp1 family, dimerisation domain containing protein
LOC_Os08g28790Os.55488.1.S1_at11/118+17480729..17481529Dirigent-like protein, expressed
LOC_Os08g28800Os.38424.1.S1_at2/118+17485050..17485559SKP1-like protein 1A, putative
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17215.1.S1_at--230--9351Chr08:17489836..17489860 (25 bp)
TCGCTCGTGGTCAAACCGGATGGGA
LOC_Os08g28810
OsAffx.17215.1.S1_at--157--4492Chr08:17489810..17489834 (25 bp)
GCCGGCAAGACAGGAGCTCAGGCTT
LOC_Os08g28810
OsAffx.17215.1.S1_at--866--552Chr08:17489726..17489750 (25 bp)
ATCCGGTCCTCCATGGCGGGATCTG
LOC_Os08g28810
OsAffx.17215.1.S1_at--682--8511NONE
TGGAAGGCTTCAAGCTGGTGGTCTA
NONE
OsAffx.17215.1.S1_at--877--1611Chr08:17488617..17488641 (25 bp)
AGCTGGTGGTCTAGTACTTCCACAG
LOC_Os08g28810
OsAffx.17215.1.S1_at--834--8591Chr08:17488611..17488635 (25 bp)
TGGTCTAGTACTTCCACAGCCTTTT
LOC_Os08g28810
OsAffx.17215.1.S1_at--692--9211Chr08:17488599..17488623 (25 bp)
TCCACAGCCTTTTGGTCACCACTTT
LOC_Os08g28810
OsAffx.17215.1.S1_at--354--10371Chr08:17488590..17488614 (25 bp)
TTTTGGTCACCACTTTCCCCTGTCG
LOC_Os08g28810
OsAffx.17215.1.S1_at--310--10651Chr08:17488576..17488600 (25 bp)
TTCCCCTGTCGGCATGCTCGTGGCA
LOC_Os08g28810
OsAffx.17215.1.S1_at--1032--8711Chr08:17488570..17488594 (25 bp)
TGTCGGCATGCTCGTGGCACTCTGC
LOC_Os08g28810
OsAffx.17215.1.S1_at--240--632Chr08:17488563..17488587 (25 bp)
ATGCTCGTGGCACTCTGCCCTTTGG
LOC_Os08g28810
Target Sequence 
TCGCTCGTGGTCAAACCGGATGGGACGCCGGCAAGACAGGAGCTCAGGCTTGGTGCTGGCGACGAGGAGAAGCGCCCGGC
GGCGGCCAGATCCGGCGCCGTGGAGGCCGGATCCGGTCCTCCATGGCGGGATCTGCTCGGCGGCGGGGTTGGAAGGCTTC
AAGCTGGTGGTCTAGTACTTCCACAGCCTTTTGGTCACCACTTTCCCCTGTCGGCATGCTCGTGGCACTCTGCCCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis