Browse Element(s) Details


OsAffx.17253.1.S1_at

Description tigr:9636.m03088
TID=OsAffx.17253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mammalian MHC III region protein G9a, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3091011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed
LOC_Os08g30930Os.13573.1.S1_at11/118+18961923..18966098expressed protein
LOC_Os08g30940NANA8+18971302..18974187retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.22699.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.8201.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30960NANA8+18980891..18982617hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010216biological_processmaintenance of DNA methylation
GO:0016571biological_processhistone methylation
GO:0018022biological_processpeptidyl-lysine methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
GO:0046974molecular_functionhistone lysine N-methyltransferase activity (H3-K9 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17253.1.S1_at--123--1111Chr08:18956063..18956087 (25 bp)
AGTGTGGTCCATCCTGTAGGTGCCA
LOC_Os08g30910
OsAffx.17253.1.S1_at--826--6931Chr08:18956078..18956102 (25 bp)
GTAGGTGCCATTCTTCATGCCACAA
LOC_Os08g30910
OsAffx.17253.1.S1_at--71--7451Chr08:18956168..18956192 (25 bp)
GTGTAAGATCCCTAAGGTCCATCTC
LOC_Os08g30910
OsAffx.17253.1.S1_at--721--451Chr08:18956188..18956212 (25 bp)
ATCTCTTCTGGCAGCTTTATATGTG
LOC_Os08g30910
OsAffx.17253.1.S1_at--675--10111Chr08:18956215..18956239 (25 bp)
TATGTTGGTATCCTGTTGACTGACA
LOC_Os08g30910
OsAffx.17253.1.S1_at--627--7651Chr08:18956317..18956341 (25 bp)
GGGAGGCCATCAACTATTTCTAGTC
LOC_Os08g30910
OsAffx.17253.1.S1_at--747--9831Chr08:18956342..18956366 (25 bp)
TAAACTCTTCTGGTGGTTGCTCTCA
LOC_Os08g30910
OsAffx.17253.1.S1_at--529--7911Chr08:18956356..18956380 (25 bp)
GGTTGCTCTCAGACCATGGAAGATG
LOC_Os08g30910
OsAffx.17253.1.S1_at--223--291Chr08:18956435..18956459 (25 bp)
ATAGTTGCTCACCTAACCTCTATGC
LOC_Os08g30910
OsAffx.17253.1.S1_at--659--2311Chr08:18956489..18956513 (25 bp)
AAAGGGTGCCCCATATCATGTTCTT
LOC_Os08g30910
OsAffx.17253.1.S1_at--913--8991Chr08:18956574..18956598 (25 bp)
TGAAGTCCGCGACCTGAATGGCAGA
LOC_Os08g30910
Target Sequence 
AGTGTGGTCCATCCTGTAGGTGCCATTCTTCATGCCACAACAGGGTAAGTCAGAAGGGTATGAAAATCCACCTGGAAGTT
TTCAGGACAGCCAATAAAGGTTGGGGTGTAAGATCCCTAAGGTCCATCTCTTCTGGCAGCTTTATATGTGAGTATGTTGG
TATCCTGTTGACTGACAAGGAAGCTGACAAGAGAACAAACGATGAATACTTGTTTGATATAAGCCATAATTGTGATGATG
AGGATTGCTCCAAGGGGAGGCCATCAACTATTTCTAGTCTAAACTCTTCTGGTGGTTGCTCTCAGACCATGGAAGATGTG
TGCTTCACGATAGATGCGTCTGAGTACGGAAATATTGGAAGATTTATCAACCATAGTTGCTCACCTAACCTCTATGCACA
AAATGTGCTTTGGGATCATGATGACCAAAGGGTGCCCCATATCATGTTCTTTGCTGCAGAGAACATTCCTCCACTCCAAG
AGCTCACTTATGACTATAACTATAAAATAGGTGAAGTCCGCGACCTGAATGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis