Browse Element(s) Details


OsAffx.17257.1.S1_at

Description tigr:9636.m03103
TID=OsAffx.17257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3107011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17257.1.S1_at--937--4651Chr08:19053050..19053074 (25 bp)
GCGTGCGCCTCGTCCAATCCAATGG
LOC_Os08g31070
OsAffx.17257.1.S1_at--526--7731Chr08:19053122..19053146 (25 bp)
GGTGGACCTACGGTGATGTCGTCCT
LOC_Os08g31070
OsAffx.17257.1.S1_at--307--771Chr08:19053137..19053161 (25 bp)
ATGTCGTCCTCTTGCACACCGGAGA
LOC_Os08g31070
OsAffx.17257.1.S1_at--946--5111Chr08:19053150..19053174 (25 bp)
GCACACCGGAGATCGCGTGGACGAA
LOC_Os08g31070
OsAffx.17257.1.S1_at--42--5971Chr08:19053185..19053209 (25 bp)
GAGAAGGACCGTAGCCGCTCCATGA
LOC_Os08g31070
OsAffx.17257.1.S1_at--162--8091Chr08:19053190..19053214 (25 bp)
GGACCGTAGCCGCTCCATGACCATG
LOC_Os08g31070
OsAffx.17257.1.S1_at--526--1831Chr08:19053219..19053243 (25 bp)
ACGCGCTGCGAGTGAGCCTGCGCCT
LOC_Os08g31070
OsAffx.17257.1.S1_at--134--4571Chr08:19053302..19053326 (25 bp)
GCGCCGACAACGACGGTGAACAGGA
LOC_Os08g31070
OsAffx.17257.1.S1_at--845--7351Chr08:19053317..19053341 (25 bp)
GTGAACAGGACGAACCACGCGGCGC
LOC_Os08g31070
OsAffx.17257.1.S1_at--1095--9711Chr08:19053398..19053422 (25 bp)
TCAACCGCGGCCATCGATCTTGTCA
LOC_Os08g31070
OsAffx.17257.1.S1_at--770--511Chr08:19053410..19053434 (25 bp)
ATCGATCTTGTCACACACACTCTCA
LOC_Os08g31070
Target Sequence 
GCGTGCGCCTCGTCCAATCCAATGGGATTCTCCTCCGCCGCCTCTGCATTCCCTGACGCCGCCGGCGACGTCGGTGGACC
TACGGTGATGTCGTCCTCTTGCACACCGGAGATCGCGTGGACGAAGGAGAAGGCGGAGAAGGACCGTAGCCGCTCCATGA
CCATGGACGACGCGCTGCGAGTGAGCCTGCGCCTGGTCGACGACGGCGGCGGCGGCGGCGCCTGCTCATGCGCCCGGGAC
GACACAGCGACGGCGCCGACAACGACGGTGAACAGGACGAACCACGCGGCGCCCGGGCTGAGCCACGGCGGCAGCGGCCA
CCACCACAACGACGGCGACGACGACGACTCAACCGCGGCCATCGATCTTGTCACACACACTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis