Browse Element(s) Details


OsAffx.17258.1.S1_at

Description tigr:9636.m03104
TID=OsAffx.17258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3108011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0010199biological_processorgan boundary specification
GO:0048441biological_processpetal development
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17258.1.S1_at--926--1691Chr08:19058754..19058778 (25 bp)
ACCACAGCAGCTTTACGATTACTTC
LOC_Os08g31080
OsAffx.17258.1.S1_at--473--6551Chr08:19058770..19058794 (25 bp)
GATTACTTCTACTACGACTCGACCG
LOC_Os08g31080
OsAffx.17258.1.S1_at--960--8931Chr08:19058799..19058823 (25 bp)
TGACGACGTCAGTAGCAAGCCGCAT
LOC_Os08g31080
OsAffx.17258.1.S1_at--335--5171Chr08:19058813..19058837 (25 bp)
GCAAGCCGCATCTCGACATCAATGT
LOC_Os08g31080
OsAffx.17258.1.S1_at--312--651Chr08:19058845..19058869 (25 bp)
ATGCAGCATTTTGATTTCGACACCA
LOC_Os08g31080
OsAffx.17258.1.S1_at--626--6531Chr08:19058857..19058881 (25 bp)
GATTTCGACACCAACTATGATGCTG
LOC_Os08g31080
OsAffx.17258.1.S1_at--346--2231Chr08:19058885..19058909 (25 bp)
ACAAGGTTGAGCTCACATCCGATCA
LOC_Os08g31080
OsAffx.17258.1.S1_at--364--5831Chr08:19058975..19058999 (25 bp)
GACCGTCACTCGTCGATGTGTTCGA
LOC_Os08g31080
OsAffx.17258.1.S1_at--970--731Chr08:19058990..19059014 (25 bp)
ATGTGTTCGACCTTCGGCAGGAGGA
LOC_Os08g31080
OsAffx.17258.1.S1_at--1158--7711Chr08:19059066..19059090 (25 bp)
GGTGGATATGAACGCCGACATCGAT
LOC_Os08g31080
OsAffx.17258.1.S1_at--813--2011Chr08:19059262..19059286 (25 bp)
ACTCAAATGGCCGAGTCGTCGCATT
LOC_Os08g31080
Target Sequence 
ACCACAGCAGCTTTACGATTACTTCTACTACGACTCGACCGCCGGTGACGACGTCAGTAGCAAGCCGCATCTCGACATCA
ATGTCGATGGAATGCAGCATTTTGATTTCGACACCAACTATGATGCTGAACACAAGGTTGAGCTCACATCCGATCACCAA
ATGCCGGTAGGGGTGGATGAGCACAACCAGATTGATGATAAGGGGTTCGAGATAAAGTCGGGACCGTCACTCGTCGATGT
GTTCGACCTTCGGCAGGAGGAGGAGCAAGTGCAGACGGTGGACGTGAACACGGACATCGAGGTCAAGGAAATGGTGGATA
TGAACGCCGACATCGATGTCAAGACAATGGTGGACGAGAACAGCAACATCGACATTATCAAGACAATGGTGGACGTGAAC
GCCGACATCGTCGACGTTGTCAAGACGGTGGTGGACGTGAACGGCGACATTGGTGTTAAAGAGGAGCTGCCGGAGCTGGA
CAATGGCAAGATCATAGCAGGTGATGCGACTCAAATGGCCGAGTCGTCGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis