Browse Element(s) Details


OsAffx.17325.1.S1_at

Description tigr:9636.m03428
TID=OsAffx.17325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3418011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein
LOC_Os08g34190Os.50818.1.S1_at11/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34190OsAffx.2825.1.S1_x_at1/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34200NANA8+21306118..21307050hypothetical protein
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
LOC_Os08g34220Os.10424.1.S1_at11/118+21318122..21320859Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17325.1.S1_at--1136--10092Chr08:21295427..21295521 (25 bp)
TTGCCGGGAAAGAGGTGAACACCAT
LOC_Os08g34180
OsAffx.17325.1.S1_at--380--371Chr08:21294614..21294638 (25 bp)
ATCAATGGTGAGTTCGTCGTGGCCA
LOC_Os08g34180
OsAffx.17325.1.S1_at--759--9291Chr08:21294575..21294599 (25 bp)
TCCGCATGGATGAGCTCCCTAGAAT
LOC_Os08g34180
OsAffx.17325.1.S1_at--89--1471Chr08:21294555..21294579 (25 bp)
AGAATGGGCGACCTTACGCATGAAA
LOC_Os08g34180
OsAffx.17325.1.S1_at--1072--8991Chr08:21293454..21293478 (25 bp)
TGAAGTAGATGCAGCCAGCCTCGAC
LOC_Os08g34180
OsAffx.17325.1.S1_at--863--2131Chr08:21293431..21293455 (25 bp)
ACAGTAGGCAAGTTGTCAGCTTCGA
LOC_Os08g34180
OsAffx.17325.1.S1_at--996--7091Chr08:21293417..21293441 (25 bp)
GTCAGCTTCGACAGAGAAACTCCTG
LOC_Os08g34180
OsAffx.17325.1.S1_at--1086--5971Chr08:21293404..21293428 (25 bp)
GAGAAACTCCTGATCTAGCTGATAA
LOC_Os08g34180
OsAffx.17325.1.S1_at--773--2471Chr08:21292841..21293368 (25 bp)
AACACCTTGTCACGGAAATCCAACA
LOC_Os08g34180
OsAffx.17325.1.S1_at--1099--8232Chr04:7317935..7318084 (25 bp)
GGCACAAGCACAGCGGCTAGGCACA
NONE
OsAffx.17325.1.S1_at--634--4851Chr08:21292064..21292088 (25 bp)
GCTAGGCACACGCAACTGCGAGGCA
LOC_Os08g34180
Target Sequence 
TTGCCGGGAAAGAGGTGAACACCATCAATGGTGAGTTCGTCGTGGCCACCTCCCTGACCTCCTCCGCATGGATGAGCTCC
CTAGAATGGGCGACCTTACGCATGAAAGGGGTTGAGCATGCTGGTCTTATGGGGTGGCGTCATCTCCAAGATCATGACAA
GGCCAATGGCCATGTTGGCGATGAAGAGGTTCTGTTTCATGAAGTAGATGCAGCCAGCCTCGACAGTAGGCAAGTTGTCA
GCTTCGACAGAGAAACTCCTGATCTAGCTGATAAAGAGGGAGCGGTTGTCAAGGCTTCTGACCGGGACAAACACCTTGTC
ACGGAAATCCAACAAGCTAGGAGTGAAATACTGAGAAAGCCAACTGATGTTATCAAAGTATTCAGGTGGAGCTGGGCGGT
GCAGCGGCGTGGTGAAGGGCGGCGCTGGGGCGTGGTGAAGGGCGACGCAGGCGAGGCTGTGCGGCGCTGCGCAGGCACGA
CGCTTGCACGGCGACGCGGCACAAGCACAGCGGCTAGGCACACGCAACTGCGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis