Browse Element(s) Details


OsAffx.17341.1.S1_at

Description tigr:9636.m03518
TID=OsAffx.17341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3503011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein
LOC_Os08g35020Os.50495.1.S1_at11/118+21927204..21932299retrotransposon protein, putative, unclassified, expressed
LOC_Os08g35030OsAffx.17341.1.S1_at11/118+21933338..21934835hypothetical protein
LOC_Os08g35040NANA8+21941365..21944674retrotransposon protein, putative, unclassified
LOC_Os08g35050Os.22539.2.A1_a_at11/118+21952046..21960915expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17341.1.S1_at--485--6311Chr08:21934770..21934794 (25 bp)
GATGAAGAGCTCACGAACCAGTAGT
LOC_Os08g35030
OsAffx.17341.1.S1_at--1156--2612Chr04:32733837..32733860 (24 bp)
AACCAGTAGTGCTCGTCGCCGGAGT
NONE
OsAffx.17341.1.S1_at--595--7232Chr04:32733850..32733874 (25 bp)
GTCGCCGGAGTATAGCTTCAGTCCA
NONE
OsAffx.17341.1.S1_at--756--9992Chr04:32733862..32733886 (25 bp)
TAGCTTCAGTCCATCAAGAGGATCC
NONE
OsAffx.17341.1.S1_at--61--7111Chr08:21934695..21934719 (25 bp)
GTCATCAAGTCAAACGCCGACCACA
LOC_Os08g35030
OsAffx.17341.1.S1_at--400--3491Chr08:21934665..21934689 (25 bp)
CAGGCCGCGGCCACTGAGTCAGACG
LOC_Os08g35030
OsAffx.17341.1.S1_at--197--9411Chr08:21934554..21934578 (25 bp)
TCGTCATTCTCTTGCCGGCGACGGT
LOC_Os08g35030
OsAffx.17341.1.S1_at--312--8392Chr04:32734053..32734077 (25 bp)
GGCGACGGTGTCCAGAACATCTCCT
NONE
OsAffx.17341.1.S1_at--1117--1411Chr08:21934277..21934447 (25 bp)
AGAAAGATATCTTGCGACGCATCCG
LOC_Os08g35030
OsAffx.17341.1.S1_at--1003--5791Chr08:21934262..21934286 (25 bp)
GACGCATCCGATCGCGTATTGCTCT
LOC_Os08g35030
OsAffx.17341.1.S1_at--817--531Chr08:21934252..21934276 (25 bp)
ATCGCGTATTGCTCTCGAGGTGGAT
LOC_Os08g35030
Target Sequence 
GATGAAGAGCTCACGAACCAGTAGTGCTCGTCGCCGGAGTATAGCTTCAGTCCATCAAGAGGATCCTTCCGCCGCGTCAT
CAAGTCAAACGCCGACCACAAATGGCAGGCCGCGGCCACTGAGTCAGACGCCGCCGTGCGGTCCAAGTGCTCGCGCCTCG
CCGCGTCGGCCGCTACAGCGCGGCCCGGGTGCTCGCGCTTCACGAGGACGGCCGCCTCGTCATTCTCTTGCCGGCGACGG
TGTCCAGAACATCTCCTCGCACAGCGCTGCCTCTTCCCCTTCTCCTCGCACAGCCTCGCCTCTTCCCACATGTTCGCCGG
ATGAGGAGGTGAAAGAAACTGCAGGAGAGAAAGATATCTTGCGACGCATCCGATCGCGTATTGCTCTCGAGGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis