Browse Element(s) Details


OsAffx.17361.1.S1_at

Description tigr:9636.m03685
TID=OsAffx.17361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic-type carbonic anhydrase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3668010/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36640OsAffx.29563.1.S1_at11/118+22993581..22993838hypothetical protein
LOC_Os08g36650OsAffx.10905.2.S1_at7/118+22996618..22998928retrotransposon protein, putative, unclassified
LOC_Os08g36660OsAffx.29564.1.S1_at11/118+23000788..23003041expressed protein
LOC_Os08g36670OsAffx.22940.3.S1_at10/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.3.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.1.S1_s_at6/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.3.S1_x_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.2.S1_s_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.18.S1_x_at3/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_at2/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.31552.2.S1_at1/118+23004725..23011995hypothetical protein
LOC_Os08g36680OsAffx.17361.1.S1_at10/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36680OsAffx.27787.1.S1_at1/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36690NANA8+23023715..23024014hypothetical protein
LOC_Os08g36700OsAffx.6046.1.S1_at11/118+23025454..23026689HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g36710OsAffx.13097.1.S1_s_at11/118+23028125..23030652hypothetical protein
LOC_Os08g36720NANA8+23034232..23037563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.47463.1.S1_x_at5/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.14491.2.S1_x_at4/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17361.1.S1_at--206--3931NONE
CGGCCATGACATCGAGGTGAAGTTT
NONE
OsAffx.17361.1.S1_at--119--8551Chr08:23015840..23015864 (25 bp)
TGGAGCTGCACCTTGTACACGACGA
LOC_Os08g36680
OsAffx.17361.1.S1_at--533--7391Chr08:23015796..23015820 (25 bp)
GTGATCGGCAATCTCTACCAAATCG
LOC_Os08g36680
OsAffx.17361.1.S1_at--893--3831Chr08:23015393..23015778 (25 bp)
CTGCTCATGCTGGAGCCATTCATTA
LOC_Os08g36680
OsAffx.17361.1.S1_at--714--7491Chr08:23015327..23015351 (25 bp)
GTGGTGGATCCACAGCTAGCCAAGA
LOC_Os08g36680
OsAffx.17361.1.S1_at--789--1371Chr08:23015298..23015322 (25 bp)
AGACGCCGTGTACTATCGTTACATG
LOC_Os08g36680
OsAffx.17361.1.S1_at--359--1071Chr08:23015245..23015269 (25 bp)
AGGGAGTGATCTGGACGGTTTTCAA
LOC_Os08g36680
OsAffx.17361.1.S1_at--762--10411Chr08:23015037..23015057 (21 bp)
TTTTGGCCCAGACTGTGGCACAGTA
LOC_Os08g36680
OsAffx.17361.1.S1_at--805--1191Chr08:23015016..23015040 (25 bp)
AGTATCAGCTTGATCTTCTCAGGGA
LOC_Os08g36680
OsAffx.17361.1.S1_at--927--431Chr08:23015004..23015028 (25 bp)
ATCTTCTCAGGGAAGCCGTGGCTGA
LOC_Os08g36680
OsAffx.17361.1.S1_at--950--10411Chr08:23014565..23014589 (25 bp)
TTATGAGAACAACGCAAGGCCCCTT
LOC_Os08g36680
Target Sequence 
CGGCCATGACATCGAGGTGAAGTTTATGGGAAACGCCGGGAGAGTGGTGATCAACGGCAAGGCGTACAAGCTCAAGCAGC
TGCACTGGCACACGCCCTCCGAGCACACCGTCAACGGCCGCAGGTATGACATGGAGCTGCACCTTGTACACGACGACGGC
AACAGCAACACGGCGGTGATCGGCAATCTCTACCAAATCGGCAACCCCGACCCCTTCCTGCTCATGCTGGAGCCATTCAT
TAGAAGGATAGCAGATACAAAAGATAAGTCAGAGCCGATCGGTGTGGTGGATCCACAGCTAGCCAAGAGCCCAGACGCCG
TGTACTATCGTTACATGGGCTCCCTCACGACACCGCCTTGCACGGAGGGAGTGATCTGGACGGTTTTCAAGAGGGTTTTT
CTTTTGGCCCAGACTGTGGCACAGTATCAGCTTGATCTTCTCAGGGAAGCCGTGGCTGACGGTTATGAGAACAACGCAAG
GCCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis