Browse Element(s) Details


OsAffx.6046.1.S1_at

Description tigr:9636.m03687
TID=OsAffx.6046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HSF-type DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3670011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36660OsAffx.29564.1.S1_at11/118+23000788..23003041expressed protein
LOC_Os08g36670OsAffx.22940.3.S1_at10/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.3.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.1.S1_s_at6/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.3.S1_x_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.2.S1_s_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.18.S1_x_at3/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_at2/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.31552.2.S1_at1/118+23004725..23011995hypothetical protein
LOC_Os08g36680OsAffx.17361.1.S1_at10/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36680OsAffx.27787.1.S1_at1/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36690NANA8+23023715..23024014hypothetical protein
LOC_Os08g36700OsAffx.6046.1.S1_at11/118+23025454..23026689HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g36710OsAffx.13097.1.S1_s_at11/118+23028125..23030652hypothetical protein
LOC_Os08g36720NANA8+23034232..23037563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.47463.1.S1_x_at5/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.14491.2.S1_x_at4/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6046.1.S1_at--384--6331Chr08:23025946..23025970 (25 bp)
GATGCAGGAGAACCACCGGCTGCTA
LOC_Os08g36700
OsAffx.6046.1.S1_at--404--1431Chr08:23025938..23025962 (25 bp)
AGAACCACCGGCTGCTACGCGGCAA
LOC_Os08g36700
OsAffx.6046.1.S1_at--535--8091Chr08:23025722..23025746 (25 bp)
GGAGCGCCACGTCCAGTAGCTCGCT
LOC_Os08g36700
OsAffx.6046.1.S1_at--935--1171Chr08:23025708..23025732 (25 bp)
AGTAGCTCGCTCACGGTGGCCGAAG
LOC_Os08g36700
OsAffx.6046.1.S1_at--1103--4791Chr08:23025704..23025728 (25 bp)
GCTCGCTCACGGTGGCCGAAGACCA
LOC_Os08g36700
OsAffx.6046.1.S1_at--652--5351Chr08:23025640..23025664 (25 bp)
GAAGATCATCAACGAGGTGTCCGGC
LOC_Os08g36700
OsAffx.6046.1.S1_at--696--4691Chr08:23025605..23025629 (25 bp)
GCGGCAGCACCAAGCTGTTCGGCGT
LOC_Os08g36700
OsAffx.6046.1.S1_at--484--1611Chr08:23025593..23025617 (25 bp)
AGCTGTTCGGCGTGCACCTGAGCAG
LOC_Os08g36700
OsAffx.6046.1.S1_at--838--8791Chr08:23025590..23025614 (25 bp)
TGTTCGGCGTGCACCTGAGCAGCGC
LOC_Os08g36700
OsAffx.6046.1.S1_at--139--9611Chr08:23025552..23025576 (25 bp)
TCATCAGGCGCGAGCCGCAAGAGAT
LOC_Os08g36700
OsAffx.6046.1.S1_at--622--1671Chr08:23025540..23025564 (25 bp)
AGCCGCAAGAGATCACCGCCGCAAG
LOC_Os08g36700
Target Sequence 
GATGCAGGAGAACCACCGGCTGCTACGCGGCAACGCGGCGCTGGTGCAGGAGCTGGCGCACATGCGCAAGCTCTACAGCG
ACATCATCTACTTCGTGCAGAACCACGTGCGTCCCGTGGCGCCCAGCCCGGCCGCGGCGGCCGCGCTGCACGGCCTCGGC
GTTCTACGGCCGCCGCCGGCGGGCGGGAAGGCGCCCGCGTCCGAGGTGCGCGGCGCCTCCGGCCGGAGCGCCACGTCCAG
TAGCTCGCTCACGGTGGCCGAAGACCAGCCCACGCTGCTGGCTCTGCGGCTGCCGCGGACGACGGAGAAGATCATCAACG
AGGTGTCCGGCGGCAACGGCGGCGGCAGCACCAAGCTGTTCGGCGTGCACCTGAGCAGCGCCGACGAGCAGACGTCATCA
GGCGCGAGCCGCAAGAGATCACCGCCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis