Browse Element(s) Details


OsAffx.17363.1.S1_at

Description tigr:9636.m03692
TID=OsAffx.17363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AC002330 hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3675010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36740OsAffx.17362.1.S1_at11/118+23061693..23062433Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g36750OsAffx.17363.1.S1_at10/118+23074014..23075064hypothetical protein
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17363.1.S1_at--236--1331NONE
AGAGGAAACGGATCGGAGGATTCCA
NONE
OsAffx.17363.1.S1_at--523--8251Chr08:23074624..23074648 (25 bp)
GGCACCGCCGGAAGATATACGGACA
LOC_Os08g36750
OsAffx.17363.1.S1_at--889--8191Chr08:23074633..23074657 (25 bp)
GGAAGATATACGGACATCGCCGCCG
LOC_Os08g36750
OsAffx.17363.1.S1_at--409--531Chr08:23074648..23074672 (25 bp)
ATCGCCGCCGATCTTATAGACAGTG
LOC_Os08g36750
OsAffx.17363.1.S1_at--546--2871Chr08:23074720..23074744 (25 bp)
AAGGGTCCGAAGGAAAGATCATCGA
LOC_Os08g36750
OsAffx.17363.1.S1_at--310--1531Chr08:23074855..23074879 (25 bp)
AGCAGGCACGCGAGGATCACCGCCG
LOC_Os08g36750
OsAffx.17363.1.S1_at--267--3811Chr08:23074885..23074909 (25 bp)
CTCCGCAAGGAGAACCAGGTGTACA
LOC_Os08g36750
OsAffx.17363.1.S1_at--632--972Chr08:23074892..23074916 (25 bp)
AGGAGAACCAGGTGTACAGCGCCGA
LOC_Os08g36750
OsAffx.17363.1.S1_at--342--4631Chr08:23074936..23074960 (25 bp)
GCGTTCAACTCCGAGCAGAGGGCGA
LOC_Os08g36750
OsAffx.17363.1.S1_at--761--1731Chr08:23074985..23075009 (25 bp)
ACCTCCGGTGCCTCGTGGACAGGAC
LOC_Os08g36750
OsAffx.17363.1.S1_at--486--8531Chr08:23075000..23075024 (25 bp)
TGGACAGGACGCTCGGCAAGCTCGC
LOC_Os08g36750
Target Sequence 
AGAGGAAACGGATCGGAGGATTCCAGGAGGGACAGCAAGCGGCGGCGGCGGCACCGCCGGAAGATATACGGACATCGCCG
CCGATCTTATAGACAGTGATAGCGATGAGTCCAGAGATAGAAGTAGGAAGAGATCAAGAAGTCAAAAGGGTCCGAAGGAA
AGATCATCGAGGAAGAAGAAGAGCAGGAGGGATGGATCAACGAGGAAGAAGGAGGCCAGTGAGGGTGCTCGGTTCGCGCT
GGAAGACGGCAATGGCGGCACCGGGTACGTGATGAGCGGGAGCAGGCACGCGAGGATCACCGCCGTGCGCCTCCGCAAGG
AGAACCAGGTGTACAGCGCCGAGGAGAAGCGCGCGCTCGCCGCGTTCAACTCCGAGCAGAGGGCGAGGCGGGAGAGCAAG
GTCAGGGACGACCTCCGGTGCCTCGTGGACAGGACGCTCGGCAAGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis