Browse Element(s) Details


OsAffx.17394.1.S1_at

Description tigr:9636.m03838
TID=OsAffx.17394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3814011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative
LOC_Os08g38140OsAffx.17394.1.S1_at11/118+24028007..24028713expressed protein
LOC_Os08g38150Os.50889.1.S1_at2/118+24029333..24033190hypothetical protein
LOC_Os08g38150OsAffx.30891.1.S1_x_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38150Os.27101.1.S1_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38160OsAffx.29583.2.S1_x_at2/118+24034944..24036335UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17394.1.S1_at--531--1071Chr08:24028290..24028314 (25 bp)
AGGGACGCAATTACGGCGCGCTCGT
LOC_Os08g38140
OsAffx.17394.1.S1_at--910--7311Chr08:24028379..24028403 (25 bp)
GTGCTCATCCGAGGCGGCACTACGA
LOC_Os08g38140
OsAffx.17394.1.S1_at--530--911Chr08:24028390..24028414 (25 bp)
AGGCGGCACTACGACCGGGCTGGCA
LOC_Os08g38140
OsAffx.17394.1.S1_at--351--7571Chr08:24028417..24028441 (25 bp)
GGGCTGGCCGGTGGGATCGTGCTCA
LOC_Os08g38140
OsAffx.17394.1.S1_at--885--7471Chr08:24028427..24028451 (25 bp)
GTGGGATCGTGCTCACGGCGTTCCT
LOC_Os08g38140
OsAffx.17394.1.S1_at--965--3331Chr08:24028440..24028464 (25 bp)
CACGGCGTTCCTGGTTGCTCTGCTG
LOC_Os08g38140
OsAffx.17394.1.S1_at--619--9451Chr08:24028544..24028568 (25 bp)
TCGGCCCCGGCAAGCGTGCTCAGTG
LOC_Os08g38140
OsAffx.17394.1.S1_at--117--9191Chr08:24028593..24028617 (25 bp)
TGCCTGGCTCGTCAAGCTCAGTCCG
LOC_Os08g38140
OsAffx.17394.1.S1_at--159--7091Chr08:24028603..24028627 (25 bp)
GTCAAGCTCAGTCCGCTCTTCGATG
LOC_Os08g38140
OsAffx.17394.1.S1_at--286--4831Chr08:24028608..24028632 (25 bp)
GCTCAGTCCGCTCTTCGATGACCTG
LOC_Os08g38140
OsAffx.17394.1.S1_at--588--691Chr08:24028625..24028649 (25 bp)
ATGACCTGCGTGTCTCGCCCAAGTA
LOC_Os08g38140
Target Sequence 
AGGGACGCAATTACGGCGCGCTCGTGTTCCTCAGGCTGGAGCTTATGCTCGTCATCCTCGCCATGCCCTGCGTCTCCCAG
GCGTCGGCGGTGCTCATCCGAGGCGGCACTACGACCGGGCTGGCACCGGGCTGGCCGGTGGGATCGTGCTCACGGCGTTC
CTGGTTGCTCTGCTGCTGTTCCTGTCGCTGGGCGTCACTACGGGGAGGCTGCTGCACTACAAGGAGGTGCACCAGGAGAT
TGTTCGCCGGACGCTCGGCCCCGGCAAGCGTGCTCAGTGGACGTGGAAGGACCCCGCCCGCCCTGCCTGGCTCGTCAAGC
TCAGTCCGCTCTTCGATGACCTGCGTGTCTCGCCCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis