Browse Element(s) Details


OsAffx.17401.1.S1_at

Description tigr:9636.m03870
TID=OsAffx.17401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17401.1.S1_at--702--2231Chr08:24188438..24188462 (25 bp)
ACAATGGTCGCTTGTGCTTATGCCT
LOC_Os08g38420
OsAffx.17401.1.S1_at--381--9351Chr08:24188431..24188455 (25 bp)
TCGCTTGTGCTTATGCCTGTGTCAA
LOC_Os08g38420
OsAffx.17401.1.S1_at--287--7331Chr08:24188425..24188449 (25 bp)
GTGCTTATGCCTGTGTCAACGAGAA
LOC_Os08g38420
OsAffx.17401.1.S1_at--760--4471Chr08:24188417..24188441 (25 bp)
GCCTGTGTCAACGAGAAGCAGATCT
LOC_Os08g38420
OsAffx.17401.1.S1_at--262--2591Chr08:24188408..24188432 (25 bp)
AACGAGAAGCAGATCTTGGGTGGAA
LOC_Os08g38420
OsAffx.17401.1.S1_at--836--6231Chr08:24188369..24188393 (25 bp)
GATGGCAGCATAGACAAATGTCGGT
LOC_Os08g38420
OsAffx.17401.1.S1_at--754--7731Chr08:24188339..24188363 (25 bp)
GGTGGTGTATGCGAGCGCCGGCATA
LOC_Os08g38420
OsAffx.17401.1.S1_at--1162--4231Chr08:24188322..24188346 (25 bp)
CCGGCATAGGCTTGCCGTGTTTGGT
LOC_Os08g38420
OsAffx.17401.1.S1_at--1120--4231Chr08:24188292..24188316 (25 bp)
CCGGCTTGTCGGTGGTAATGGACTC
LOC_Os08g38420
OsAffx.17401.1.S1_at--129--10811Chr08:24188287..24188311 (25 bp)
TTGTCGGTGGTAATGGACTCGCAGA
LOC_Os08g38420
OsAffx.17401.1.S1_at--615--4911Chr08:24188241..24188265 (25 bp)
GCTTCGGCTCTGGTGGCTTTGGCCC
LOC_Os08g38420
Target Sequence 
ACAATGGTCGCTTGTGCTTATGCCTGTGTCAACGAGAAGCAGATCTTGGGTGGAAGTTGTTGGGATGGAGATGGCAGCAT
AGACAAATGTCGGTGTGGTGGTGGTGTATGCGAGCGCCGGCATAGGCTTGCCGTGTTTGGTGGTGTCCGGCTTGTCGGTG
GTAATGGACTCGCAGAGGAGTGGGAGGGTGAGCGATGGCTTCGGCTCTGGTGGCTTTGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis