Browse Element(s) Details


OsAffx.17426.1.S1_at

Description tigr:9636.m04040
TID=OsAffx.17426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to polygalacturonase inhibiting protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3994011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004857molecular_functionenzyme inhibitor activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17426.1.S1_at--148--5691Chr08:25178127..25178151 (25 bp)
GACATTGACACCATTGATCTCTCAC
LOC_Os08g39940
OsAffx.17426.1.S1_at--770--7831Chr08:25178088..25178112 (25 bp)
GGTAATCAACCCATTGTTCTTGTTT
LOC_Os08g39940
OsAffx.17426.1.S1_at--474--5251Chr08:25178025..25178049 (25 bp)
GAATCGGCTTGAGTTTGACATGACA
LOC_Os08g39940
OsAffx.17426.1.S1_at--10--5631Chr08:25178004..25178028 (25 bp)
GACAAAGGTCAGGTTTCCTCACCAT
LOC_Os08g39940
OsAffx.17426.1.S1_at--822--10631Chr08:25177990..25178014 (25 bp)
TTCCTCACCATCTGAACTACTTGGA
LOC_Os08g39940
OsAffx.17426.1.S1_at--48--8111Chr08:25177968..25177992 (25 bp)
GGACCTGAGCCATAACAGCATCAAG
LOC_Os08g39940
OsAffx.17426.1.S1_at--985--751Chr08:25177897..25177921 (25 bp)
ATGTCAGCTACAACGAGCTCTGTGG
LOC_Os08g39940
OsAffx.17426.1.S1_at--1124--2451Chr08:25177817..25177841 (25 bp)
AACAAGTGTCTCTGTGGCTCACCTT
LOC_Os08g39940
OsAffx.17426.1.S1_at--210--2511Chr08:25177419..25177443 (25 bp)
AACATTCTTACTCCTTTCACAATAG
LOC_Os08g39940
OsAffx.17426.1.S1_at--528--351Chr08:25177392..25177416 (25 bp)
ATAAGTCTACTTATTCTCCCTCATC
LOC_Os08g39940
OsAffx.17426.1.S1_at--142--5211Chr08:25177352..25177376 (25 bp)
GAATTGCATCTCTCGATCAATCACA
LOC_Os08g39940
Target Sequence 
GACATTGACACCATTGATCTCTCACACAACCAGCTCATCGGTAATCAACCCATTGTTCTTGTTTGACATCGCAAAGCCGA
TGGCGAAGATCGATCTGTCATGGAATCGGCTTGAGTTTGACATGACAAAGGTCAGGTTTCCTCACCATCTGAACTACTTG
GACCTGAGCCATAACAGCATCAAGGGAAGGGTGGCCAAATCCTTGAAGGATATAAATCTGAAGTTCTGCAATGTCAGCTA
CAACGAGCTCTGTGGCGAGATACCAACGGGGAGGTACATGGCATACCATGGGGCAGATTGTTATGTTCACAACAAGTGTC
TCTGTGGCTCACCTTTGCCACCCTGCAAGAATGGGAAGCTCAACATTCTTACTCCTTTCACAATAGGAATAAGTCTACTT
ATTCTCCCTCATCTCTTTCCCCTCGATCGAATTGCATCTCTCGATCAATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis