Browse Element(s) Details


OsAffx.17428.1.S1_x_at

Description tigr:9636.m04059
TID=OsAffx.17428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4012010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17428.1.S1_x_at--351--8391Chr08:25262895..25262919 (25 bp)
GGCGCCGTCGAGTTCTACCTCGGCG
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--1142--3371Chr08:25262933..25262952 (20 bp)
CAGCCTCTTCCACGTCAGGTGCATG
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--36--10691NONE
TTCCACGTCAGGTGCATGCCGGTGA
NONE
OsAffx.17428.1.S1_x_at--420--3351Chr08:25264473..25264493 (21 bp)
CACGTCAGGTGCATGCCGGTGACGA
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--938--1931Chr08:25264493..25264517 (25 bp)
ACGGCGCAGGACAGGGTGTTCGACA
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--954--8771Chr08:25264509..25264533 (25 bp)
TGTTCGACAAGGTGTTCCGGGTGAT
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--812--10631Chr08:25264511..25264535 (25 bp)
TTCGACAAGGTGTTCCGGGTGATGC
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--213--9291Chr08:25264524..25264548 (25 bp)
TCCGGGTGATGCGAAGCCACGGCGT
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--111--5011Chr08:25264630..25264654 (25 bp)
GCAGGACGTCGGCTACCACGTCATC
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--477--8311Chr08:25264679..25264703 (25 bp)
GGCTACCTCAAGTCCGGCAGGATCG
LOC_Os08g40120
OsAffx.17428.1.S1_x_at--651--8231Chr08:25264706..25264730 (25 bp)
GGCAACTGCGACGAGGAGACCTGCT
LOC_Os08g40120
Target Sequence 
GGCGCCGTCGAGTTCTACCTCGGCGCCCTCGGCGTGGCCAGCCTCTTCCACGTCAGGTGCATGCCGGTGACGACGGCGCA
GGACAGGGTGTTCGACAAGGTGTTCCGGGTGATGCGAAGCCACGGCGTGGAGGACGACGGCCTCATCGTCTACCGCGACG
GCACCCTCGACGACGCCACCTACGCCGTCTGCAGCGAGCACAGCCCGGTGCAGGACGTCGGCTACCACGTCATCCCGGGG
AACACCTGCGTCGAGCTCGGCTACCTCAAGTCCGGCAGGATCGCCGGCAACTGCGACGAGGAGACCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17428.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis