Browse Element(s) Details


OsAffx.17452.1.S1_at

Description tigr:9636.m04183
TID=OsAffx.17452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4123011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17452.1.S1_at--150--8131Chr08:25904666..25904690 (25 bp)
GGACTCTGGTTCTCTCGAGCTCATA
LOC_Os08g41230
OsAffx.17452.1.S1_at--1072--7871Chr08:25904659..25904683 (25 bp)
GGTTCTCTCGAGCTCATACTAGATT
LOC_Os08g41230
OsAffx.17452.1.S1_at--116--5911Chr08:25904650..25904674 (25 bp)
GAGCTCATACTAGATTACGAGGCGA
LOC_Os08g41230
OsAffx.17452.1.S1_at--1044--1231Chr08:25904639..25904663 (25 bp)
AGATTACGAGGCGACCAACCACTGT
LOC_Os08g41230
OsAffx.17452.1.S1_at--953--1871Chr08:25904634..25904658 (25 bp)
ACGAGGCGACCAACCACTGTGCCAT
LOC_Os08g41230
OsAffx.17452.1.S1_at--893--5351Chr08:25904513..25904537 (25 bp)
GAAGATGTCGTGTATCACTCTGCAC
LOC_Os08g41230
OsAffx.17452.1.S1_at--831--7431Chr08:25904504..25904528 (25 bp)
GTGTATCACTCTGCACGACATCGAG
LOC_Os08g41230
OsAffx.17452.1.S1_at--639--8351Chr08:25904419..25904443 (25 bp)
GGCGGCGAGCTCAATACGACAGCAA
LOC_Os08g41230
OsAffx.17452.1.S1_at--385--3951Chr08:25904336..25904360 (25 bp)
CGGCAACCATCAGGCTGGGAAGCTA
LOC_Os08g41230
OsAffx.17452.1.S1_at--617--4331Chr08:25904330..25904354 (25 bp)
CCATCAGGCTGGGAAGCTAGCGAGC
LOC_Os08g41230
OsAffx.17452.1.S1_at--998--7991Chr08:25904145..25904169 (25 bp)
GGAGGCCAATGAGCTTGCGTGGAGA
LOC_Os08g41230
Target Sequence 
GGACTCTGGTTCTCTCGAGCTCATACTAGATTACGAGGCGACCAACCACTGTGCCATCCTCGTCGACGGCGAGACGTTCC
CCGCTCACCGTGCCGTGCTCGCTGCCCGCTCGCCGGTGTTCCGGGCGGAGCTCCTTGGCTCCATGGCGGAGGCGAAGATG
TCGTGTATCACTCTGCACGACATCGAGCCTGTGACGTTCAGAGCTCTACTTCGGTTCGTCTACACCGACGAGTTGCCTGC
AGACGACGGCGGCGAGCTCAATACGACAGCAATGGCGACCGAGAGGAAGAAGGGAGGAGGCTGCCTACTGATGGGGAGAA
GGGCGGGGAGCGGCAACCATCAGGCTGGGAAGCTAGCGAGCGTGCGCGGAGAGGGAGGAGGCGGGGAGGCCGATGAGCAG
GACGGAGAGCCGACGAGCGGGACGGGGCGAGGAGGCCGACGAGCGGGATGGGGAGGCCGGCGAGCACGCGAGGAGAGGGA
GAAGGTGGGGAAAGGGGCGGAGGGCGATAGCCATCGGGCGGGGAGGCCAATGAGCTTGCGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis