Browse Element(s) Details


OsAffx.17460.1.S1_at

Description tigr:9636.m04225
TID=OsAffx.17460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4159011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17460.1.S1_at--743--9351Chr08:26136811..26136835 (25 bp)
TCGCACTCGCGATGTTCCTCTGCTT
LOC_Os08g41590
OsAffx.17460.1.S1_at--943--4131Chr08:26136782..26136806 (25 bp)
CGCTCGTACGCCTACAGGAACAAGA
LOC_Os08g41590
OsAffx.17460.1.S1_at--667--9951Chr08:26136776..26136800 (25 bp)
TACGCCTACAGGAACAAGACGCTGC
LOC_Os08g41590
OsAffx.17460.1.S1_at--84--2771Chr08:26136761..26136785 (25 bp)
AAGACGCTGCTTGTACCATCAAACA
LOC_Os08g41590
OsAffx.17460.1.S1_at--1075--4911Chr08:26136753..26136777 (25 bp)
GCTTGTACCATCAAACACCAGTAGT
LOC_Os08g41590
OsAffx.17460.1.S1_at--145--6951Chr08:26136733..26136757 (25 bp)
GTAGTATTAATACTCATCATGCATG
LOC_Os08g41590
OsAffx.17460.1.S1_at--366--651Chr08:26136715..26136739 (25 bp)
ATGCATGATACTAGTACGACGGATC
LOC_Os08g41590
OsAffx.17460.1.S1_at--525--1851Chr08:26136700..26136724 (25 bp)
ACGACGGATCGATGCATGTACGGAC
LOC_Os08g41590
OsAffx.17460.1.S1_at--1066--3951Chr08:26136696..26136720 (25 bp)
CGGATCGATGCATGTACGGACAGAC
LOC_Os08g41590
OsAffx.17460.1.S1_at--331--8751Chr08:26136684..26136708 (25 bp)
TGTACGGACAGACAATCCAGATTGC
LOC_Os08g41590
OsAffx.17460.1.S1_at--579--3031Chr08:26136671..26136695 (25 bp)
AATCCAGATTGCAGACTGATTAATT
LOC_Os08g41590
Target Sequence 
TCGCACTCGCGATGTTCCTCTGCTTCGCCCGCTCGTACGCCTACAGGAACAAGACGCTGCTTGTACCATCAAACACCAGT
AGTATTAATACTCATCATGCATGATACTAGTACGACGGATCGATGCATGTACGGACAGACAATCCAGATTGCAGACTGAT
TAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis