Browse Element(s) Details


OsAffx.17493.1.S1_at

Description tigr:9636.m04404
TID=OsAffx.17493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4326011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17493.1.S1_at--65--9831Chr08:27219891..27219915 (25 bp)
TAACAAGCTGGCCACTGAAAGTCTG
LOC_Os08g43260
OsAffx.17493.1.S1_at--518--8971Chr08:27219921..27220100 (25 bp)
TGAACAGGGCCTGCTGCAATTGCAA
LOC_Os08g43260
OsAffx.17493.1.S1_at--779--7571Chr08:27220135..27220159 (25 bp)
GGGCGATCCTGCAGGCAAGCTCGAT
LOC_Os08g43260
OsAffx.17493.1.S1_at--1115--5151Chr08:27220149..27220261 (25 bp)
GCAAGCTCGATCAGCATGATTCGTA
LOC_Os08g43260
OsAffx.17493.1.S1_at--1145--611Chr08:27220292..27220316 (25 bp)
ATGCAGGCAATGCTAGGAGCTATCT
LOC_Os08g43260
OsAffx.17493.1.S1_at--958--8071Chr08:27220307..27220331 (25 bp)
GGAGCTATCTAGTCTGCATGTTTGT
LOC_Os08g43260
OsAffx.17493.1.S1_at--893--6851Chr08:27220326..27220350 (25 bp)
GTTTGTTTGTTCAGTTCTTGGGCTC
LOC_Os08g43260
OsAffx.17493.1.S1_at--640--711Chr08:27220372..27220395 (24 bp)
ATGATGCATGGCTACAGTTGGGAGC
LOC_Os08g43260
OsAffx.17493.1.S1_at--233--1251Chr08:27220387..27220773 (25 bp)
AGTTGGGAGCTGATACTGTTTCACC
LOC_Os08g43260
OsAffx.17493.1.S1_at--1082--3851Chr08:27220764..27220788 (25 bp)
CTGTTTCACCAAGAGTGCTGCACAA
LOC_Os08g43260
OsAffx.17493.1.S1_at--674--7591Chr08:27220792..27220816 (25 bp)
GGGCACTTGAACCTGCAGTGCAACT
LOC_Os08g43260
Target Sequence 
TAACAAGCTGGCCACTGAAAGTCTGATGGATGAACAGGGCCTGCTGCAATTGCAATTGCATGCATCATGTATGGTGCATG
ATGCAACAGGGGCGATCCTGCAGGCAAGCTCGATCAGCATGATTCGTAACAAGATTGATCAGTACACGAATGATGATGAT
GCAGGCAATGCTAGGAGCTATCTAGTCTGCATGTTTGTTTGTTCAGTTCTTGGGCTCAAGAAGAGAAAATGTGCAGAGAT
GATGCATGGCTACAGTTGGGAGCTGATACTGTTTCACCAAGAGTGCTGCACAAATGGGGCACTTGAACCTGCAGTGCAAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis