Browse Element(s) Details


OsAffx.17507.1.S1_at

Description tigr:9636.m04475
TID=OsAffx.17507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4395011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43840OsAffx.29651.1.S1_at10/118+27529906..27531623hypothetical protein
LOC_Os08g43850OsAffx.6128.1.S1_at11/118+27532110..27535017hypothetical protein
LOC_Os08g43860OsAffx.6128.1.S1_at2/118+27535493..27536200hypothetical protein
LOC_Os08g43870OsAffx.6128.1.S1_at1/118+27537096..27537800hypothetical protein
LOC_Os08g43880OsAffx.29652.1.S1_at10/118+27538505..27540487hypothetical protein
LOC_Os08g43890NANA8+27540755..27541480hypothetical protein
LOC_Os08g43900OsAffx.17506.1.S1_at11/118+27542747..27543534expressed protein
LOC_Os08g43910OsAffx.17506.1.S1_at4/118+27544799..27545407hypothetical protein
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17507.1.S1_at--214--4891Chr08:27553764..27553788 (25 bp)
GCTTTCTCCTCCCAACGAAGAAAAT
LOC_Os08g43950
OsAffx.17507.1.S1_at--898--9091Chr08:27553809..27553833 (25 bp)
TGCTCCCTTGAGCTATTGGATCTAT
LOC_Os08g43950
OsAffx.17507.1.S1_at--765--6031Chr08:27553906..27553930 (25 bp)
GAGATGATGCAGCTGTTCAATCCAA
LOC_Os08g43950
OsAffx.17507.1.S1_at--496--2751Chr08:27553929..27553953 (25 bp)
AAGACCCAATCATACTACCGCTTGT
LOC_Os08g43950
OsAffx.17507.1.S1_at--47--1011Chr08:27554008..27554032 (25 bp)
AGGATTGCAGGATGGCCAGGCTATT
LOC_Os08g43950
OsAffx.17507.1.S1_at--67--10171Chr08:27554050..27554074 (25 bp)
TATCAACCTCTATGCTGGAGTCCAC
LOC_Os08g43950
OsAffx.17507.1.S1_at--618--2171Chr08:27554073..27554097 (25 bp)
ACACTGCATCTCCTGTCAAAGCAAA
LOC_Os08g43950
OsAffx.17507.1.S1_at--851--8211Chr08:27554621..27554645 (25 bp)
GGAATTATCCATTGGCCCTGAACAT
LOC_Os08g43950
OsAffx.17507.1.S1_at--1016--8951Chr08:27554639..27554663 (25 bp)
TGAACATTCGCTTGTCTACTCAGGT
LOC_Os08g43950
OsAffx.17507.1.S1_at--276--9911Chr08:27554655..27554679 (25 bp)
TACTCAGGTCTCAACAGGATGGCCG
LOC_Os08g43950
OsAffx.17507.1.S1_at--1118--6551Chr08:27554685..27554709 (25 bp)
GATTCGGCTGGGAACGCAAGGCATT
LOC_Os08g43950
Target Sequence 
GCTTTCTCCTCCCAACGAAGAAAATTGTTGGATGGAGAAATGGAATGCTCCCTTGAGCTATTGGATCTATGCAACGTGAT
GCATGAGGACTTCACAGAGTTGAAGGCCATCATTCAAGATATGCAAGTGGCCCTGAGAAAAGGAGATGATGCAGCTGTTC
AATCCAAGACCCAATCATACTACCGCTTGTTGAAGAAGGCAAAGAAACATTTCAAGACTGCAAAGAAGGTTACTTATGAA
AAGGAGGATTGCAGGATGGCCAGGCTATTGAGGGAGGCTAGAGATATATCAACCTCTATGCTGGAGTCCACACTGCATCT
CCTGTCAAAGCAAATCGAAATGCCCAAACAATCACTTGTTTCCAAGGCATTCAACAAGAAGAAAGTAGTTATTTGCGAGG
AGGAGCAATTGCAGAATCACAAGGAATTATCCATTGGCCCTGAACATTCGCTTGTCTACTCAGGTCTCAACAGGATGGCC
GCGAAGGATTCGGCTGGGAACGCAAGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis