Browse Element(s) Details


OsAffx.17519.1.S1_s_at

Description tigr:9636.m04594
TID=OsAffx.17519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4504011/11Zinc finger protein 593, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45010Os.11083.1.S1_at11/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45010Os.36409.1.S1_x_at1/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45030Os.11762.5.S1_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S2_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.2.S1_x_at9/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S1_x_at2/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45040OsAffx.17519.1.S1_s_at11/118+28139495..28141626Zinc finger protein 593, putative, expressed
LOC_Os08g45050NANA8+28155104..28155448hypothetical protein
LOC_Os08g45060NANA8+28157601..28159637Leucine Rich Repeat family protein, expressed
LOC_Os08g45070NANA8+28160719..28161803expressed protein
LOC_Os08g45080Os.11811.1.S1_at11/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.17451.1.S1_at4/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.532.1.S1_x_at1/118+28162231..28172498expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17519.1.S1_s_at--1042--9291Chr08:28141538..28141562 (25 bp)
TCCGCCGCTCAGATGGGAGGCAAGT
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--361--8631Chr08:28141525..28141549 (25 bp)
TGGGAGGCAAGTGCCCGCACCGCAA
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--38--3971Chr08:28141350..28141374 (25 bp)
CGGTATGGGACAGTTCTACTGCCTC
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--379--1991Chr08:28140990..28141348 (25 bp)
ACTGCGATCGCTACTTTGCAAGTGA
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--134--8011Chr08:28140956..28140980 (25 bp)
GGAGGAGCACTACCGCTCAAAGCGC
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--624--371Chr08:28139728..28139752 (25 bp)
ATCAAGCAAATGTCAGGGCCAGCCC
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--409--1671Chr08:28139708..28139732 (25 bp)
AGCCCCACATACTCAACTTGATGCA
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--322--591Chr08:28139662..28139686 (25 bp)
ATGCCTGACAATGGCCTGAAGCTCA
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--361--9631Chr08:28139640..28139664 (25 bp)
TCATGTCCATGTGAACCTCTTCTTG
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--724--10231Chr08:28139592..28139616 (25 bp)
TTTGTCACTGCCGTACGTATGTACT
LOC_Os08g45040
OsAffx.17519.1.S1_s_at--903--1871Chr08:28139578..28139602 (25 bp)
ACGTATGTACTTGCTCTGCTTAGTA
LOC_Os08g45040
Target Sequence 
TCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGCAAGGTCAAGAAGCGCCGCCTCTCGCACAAGACGGCCCGCCGAGG
CAAGTTCCTCGTCAAGGCCGACGACGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA
CCCAGCTCCCCGTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGATCGCTACTTTGCAAGTGAG
AGTGTCAAGGAGGAGCACTACCGCTCAAAGCGCCACAAGAAAAGGATCAAGCAAATGTCAGGGCCAGCCCCACATACTCA
ACTTGATGCAGAGCTTGCTGCTGGAATGGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT
CCTGGTTTTTACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17519.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis