Browse Element(s) Details


OsAffx.17530.1.S1_at

Description tigr:9637.m00072
TID=OsAffx.17530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dna-directed rna polymerase ii 36 kda polypeptide a (ec 2.7.7.6) (rna polymerase ii subunit 3). (mouse-ear cress)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g022841/11DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02260OsAffx.6152.1.S1_at11/119+914398..916958pentatricopeptide, putative, expressed
LOC_Os09g02270Os.9823.1.S1_at11/119+919575..925013cyclase family protein, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_s_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284Os.5510.1.S1_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_at1/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17530.1.S1_at--702--1731NONE
ACCTTGGCGAGCTTGCCCGTCGTTT
NONE
OsAffx.17530.1.S1_at--593--251Chr09:932438..932763 (25 bp)
CTTGGCGAGCTTGCCCGTCGTTTTG
LOC_Os09g02284
OsAffx.17530.1.S1_at--1123--3871NONE
CTGTACATCTCCAGGCTTTGGATGC
NONE
OsAffx.17530.1.S1_at--243--3491Chr09:933150..933171 (22 bp)
CAGGCTTTGGATGCTCATATTGGAC
NONE
OsAffx.17530.1.S1_at--194--8311Chr09:933151..933171 (21 bp)
GGCTTTGGATGCTCATATTGGACAA
NONE
OsAffx.17530.1.S1_at--807--10851Chr09:933155..933496 (25 bp)
TTGGATGCTCATATTGGACAACTGA
NONE
OsAffx.17530.1.S1_at--138--6351Chr09:933158..933499 (25 bp)
GATGCTCATATTGGACAACTGAATA
NONE
OsAffx.17530.1.S1_at--258--31NONE
ATTGGACAACTGAATATATTGGATT
NONE
OsAffx.17530.1.S1_at--901--11Chr09:933501..933525 (25 bp)
ATTGGATTGTTTCTGGTGGTACTAC
NONE
OsAffx.17530.1.S1_at--500--6591Chr09:933505..933529 (25 bp)
GATTGTTTCTGGTGGTACTACCTTG
NONE
OsAffx.17530.1.S1_at--248--10311Chr09:933510..933534 (25 bp)
TTTCTGGTGGTACTACCTTGTGGCA
NONE
Target Sequence 
ACCTTGGCGAGCTTGCCCGTCGTTTTGATTGGCCTACGGTCTCCCCAGATTCATATGCTCAATGCAATGTGGCGTTTAAT
GCTGTACATCTCCAGGCTTTGGATGCTCATATTGGACAACTGAATATATTGGATTGTTTCTGGTGGTACTACCTTGTGGC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis