Browse Element(s) Details


OsAffx.17574.1.S1_at

Description tigr:9637.m00391
TID=OsAffx.17574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0632010/11retrotransposon, putative, centromere-specific
LOC_Os01g355041/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06260NANA9+2938928..2940727retrotransposon protein, putative, unclassified
LOC_Os09g06270OsAffx.30891.1.S1_x_at3/119+2942022..2945045retrotransposon protein, putative, unclassified
LOC_Os09g06280NANA9+2945374..2945856Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06290OsAffx.15648.1.S1_at1/119+2946031..2947470Zinc knuckle family protein
LOC_Os09g06300OsAffx.1196.1.S1_at2/119+2948261..2949567hypothetical protein
LOC_Os09g06300OsAffx.1196.1.S1_x_at1/119+2948261..2949567hypothetical protein
LOC_Os09g06310OsAffx.6184.1.S1_at11/119+2953032..2953319hypothetical protein
LOC_Os09g06320OsAffx.17574.1.S1_at10/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_x_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06330NANA9+2969963..2972205hypothetical protein
LOC_Os09g06340OsAffx.17573.1.S1_at11/119+2975750..2976142hypothetical protein
LOC_Os09g06350OsAffx.19542.3.S1_x_at5/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06350OsAffx.21754.1.S1_x_at2/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06350OsAffx.485.1.S1_at1/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06360NANA9+2991210..2992477hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17574.1.S1_at--114--6291NONE
GATGATTTATTTATCTCAACTCACC
NONE
OsAffx.17574.1.S1_at--107--551Chr09:2966781..2966805 (25 bp)
ATCCGCTAGCAATGTGCCCGTTGGG
LOC_Os09g06320
OsAffx.17574.1.S1_at--1159--8651Chr09:2966802..2966826 (25 bp)
TGGGCCATCAGTTAACATCGGAGAC
LOC_Os09g06320
OsAffx.17574.1.S1_at--194--5612Chr09:2966824..2966848 (25 bp)
GACACCGACTTTGACCTCAAGAGCA
LOC_Os09g06320
OsAffx.17574.1.S1_at--659--5931Chr09:2966844..2966868 (25 bp)
GAGCATCCTGATCAGTATGGCGCAG
LOC_Os09g06320
OsAffx.17574.1.S1_at--199--6931Chr09:2966858..2966882 (25 bp)
GTATGGCGCAGTCAAGCCCATTCTG
LOC_Os09g06320
OsAffx.17574.1.S1_at--154--7631Chr09:2967058..2967078 (21 bp)
GGGAGATAAGCGCTCCACTGCGTTC
LOC_Os09g06320
OsAffx.17574.1.S1_at--1106--5411Chr09:2967166..2967190 (25 bp)
GAAGCCTGGGAACATCTGCAAGAAT
LOC_Os09g06320
OsAffx.17574.1.S1_at--851--9011Chr09:2967182..2967206 (25 bp)
TGCAAGAATACGTGGCCGCATGTCC
LOC_Os09g06320
OsAffx.17574.1.S1_at--84--9551Chr09:2967245..2967269 (25 bp)
TCTATAATGGACTTACTCCCTCATC
LOC_Os09g06320
OsAffx.17574.1.S1_at--923--7951Chr09:2967273..2967297 (25 bp)
GGATCACCTGAACGCTGCTACTGGG
LOC_Os09g06320
Target Sequence 
GATGATTTATTTATCTCAACTCACCGAAAGATCGGGCCAACAACTGCGGTGAGTGTCAAGAGGAACTCAGGGTTCATCAC
ATCCGCTAGCAATGTGCCCGTTGGGCCATCAGTTAACATCGGAGACACCGACTTTGACCTCAAGAGCATCCTGATCAGTA
TGGCGCAGTCAAGCCCATTCTGTGGCAAGCCAAATGAGAATGCAAGTGCTCACTTGCAACAATTCCTGGAGATCTACGGC
ACCTACACCATGAAGGGAGATAAGCGCTCCACTGCGTTCCTCTCCAAGTTCTTCCCGATGGGAAAGACAAATGCCCTTCA
CGGGAGAATATCAAGCTTCCAGCAGACAAGGGATGAGACGATCCCAGAAGCCTGGGAACATCTGCAAGAATACGTGGCCG
CATGTCCTCACCATGGAATGGACGACTGGCTCATTCTGCAGAGTTTCTATAATGGACTTACTCCCTCATCCCGGGATCAC
CTGAACGCTGCTACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis