Browse Element(s) Details


OsAffx.17601.1.S1_s_at

Description tigr:9637.m00590
TID=OsAffx.17601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=sulfotransferase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0819011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein
LOC_Os09g08210OsAffx.17603.1.S1_at11/119+4256077..4257021hypothetical protein
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17601.1.S1_s_at--800--10871Chr09:4250343..4250367 (25 bp)
TTGGAAGGATGCTCACCATTCGGAC
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--218--7651Chr09:4250374..4250398 (25 bp)
GGGATCACTACCTCCAATACTGGAA
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--498--2891Chr09:4250466..4250490 (25 bp)
AAGGTTGTTAGGGATCTTGCAGGAT
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--854--2351Chr09:4250565..4250589 (25 bp)
AAAGCTCTCAGTGACCTTGATATCA
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--462--4151Chr09:4250633..4250657 (25 bp)
CGCGTATTCTGTGTTGTTTCGACAA
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--441--5571Chr09:4250701..4250725 (25 bp)
GAGAAAAACTGGATCAACTTGTGGA
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--599--1211Chr09:4250731..4250755 (25 bp)
AGTTCAAAGGATCAGGTCTCAAGTT
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--543--8871Chr09:4250757..4250781 (25 bp)
TGATGATAGCTATTTGGCACTTGCT
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--190--8251Chr09:4250772..4250796 (25 bp)
GGCACTTGCTAATGTCTGATCAATT
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--65--6871Chr09:4250817..4250841 (25 bp)
GTTTGTATCTTTGTATTGCTTGTCA
LOC_Os09g08190
OsAffx.17601.1.S1_s_at--869--7011Chr09:4250852..4250876 (25 bp)
GTACATACCTTCAACATGGAACTTA
LOC_Os09g08190
Target Sequence 
TTGGAAGGATGCTCACCATTCGGACCCTTCTGGGATCACTACCTCCAATACTGGAAAGAAAGCTTGAAAAGGCCTCGAGA
TGTTCTTTTCCTGAGGTATGAGGAGATCGTTTTTGATCCACTAAAGGTTGTTAGGGATCTTGCAGGATTCATCGGTGTAC
CATTTACTGAAGAGGAGGTAAAAAGTGGGGTTGACCAGGAGGTGGTGAGATTATGTAGCTTTAAAGCTCTCAGTGACCTT
GATATCAATAGAAATGGTGGCGTAGAGCGTGCAGAAGGTAAGATATTTATCGCGTATTCTGTGTTGTTTCGACAAGGGAA
GACTGGGGATTGGGTTAACCATATGAGCAAAGACATGGGAGAAAAACTGGATCAACTTGTGGAGGACAAGTTCAAAGGAT
CAGGTCTCAAGTTCTGATGATAGCTATTTGGCACTTGCTAATGTCTGATCAATTTGTTGTTGGTATCTCTGCTTGTTTGT
ATCTTTGTATTGCTTGTCAGAATATACAAGTACATACCTTCAACATGGAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17601.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis