Browse Element(s) Details


OsAffx.17602.1.S1_at

Description tigr:9637.m00591
TID=OsAffx.17602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0820011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein
LOC_Os09g08210OsAffx.17603.1.S1_at11/119+4256077..4257021hypothetical protein
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08280Os.50139.1.S1_at11/119+4276193..4276778expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17602.1.S1_at--701--2751Chr09:4254838..4254862 (25 bp)
AAGAGAACACGCAGTGGAGAAAGAA
LOC_Os09g08200
OsAffx.17602.1.S1_at--573--791Chr09:4253103..4253127 (25 bp)
ATGTGTCAGAGGAAGCAGGGCTATT
LOC_Os09g08200
OsAffx.17602.1.S1_at--905--2711Chr09:4253091..4253115 (25 bp)
AAGCAGGGCTATTCAAACCACCATA
LOC_Os09g08200
OsAffx.17602.1.S1_at--385--131Chr09:4253081..4253105 (25 bp)
ATTCAAACCACCATAGCAGTTAGGG
LOC_Os09g08200
OsAffx.17602.1.S1_at--774--2611Chr09:4253076..4253100 (25 bp)
AACCACCATAGCAGTTAGGGAGGAA
LOC_Os09g08200
OsAffx.17602.1.S1_at--1043--6171Chr09:4253057..4253081 (25 bp)
GAGGAAAACGTTTTGGTGTGTGACA
LOC_Os09g08200
OsAffx.17602.1.S1_at--851--1691Chr09:4253051..4253075 (25 bp)
AACGTTTTGGTGTGTGACAAAGATC
LOC_Os09g08200
OsAffx.17602.1.S1_at--429--5591Chr09:4253036..4253060 (25 bp)
GACAAAGATCGGCATTCTAACAGTA
LOC_Os09g08200
OsAffx.17602.1.S1_at--453--9531Chr09:4252572..4253045 (25 bp)
TCTAACAGTAAGATGCTCAGCGAGG
LOC_Os09g08200
OsAffx.17602.1.S1_at--920--9071Chr09:4252559..4252582 (24 bp)
TGCTCAGCGAGGACATGGAAAGTTG
LOC_Os09g08200
OsAffx.17602.1.S1_at--1096--8511Chr09:4252544..4252568 (25 bp)
TGGAAAGTTGCATTCATATGTACAA
LOC_Os09g08200
Target Sequence 
AAGAGAACACGCAGTGGAGAAAGAAAGGGGGAGAGGAGCACGTCTCCTCGGTGGGGGCACGTGCGGCGCACGTGGAGAGG
GAGGGAGGATGTGTCAGAGGAAGCAGGGCTATTCAAACCACCATAGCAGTTAGGGAGGAAAACGTTTTGGTGTGTGACAA
AGATCGGCATTCTAACAGTAAGATGCTCAGCGAGGACATGGAAAGTTGCATTCATATGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis