Browse Element(s) Details


OsAffx.17627.1.S1_at

Description tigr:9637.m00760
TID=OsAffx.17627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g100007/11cation exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09970Os.46314.2.S1_x_at6/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.47114.1.S1_x_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.10731.2.A1_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09980Os.16809.1.S1_at11/119+5429895..5432234Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os09g09990Os.14919.1.S1_at5/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990Os.56216.1.S1_at2/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990OsAffx.29313.1.S1_at1/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g10000Os.53295.1.A1_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_s_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_at7/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10010NANA9+5453170..5453706expressed protein
LOC_Os09g10020Os.17937.3.S1_at1/119+5455318..5460131transposon protein, putative, unclassified
LOC_Os09g10030Os.46012.3.S1_x_at7/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.46012.2.S1_x_at6/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.27088.1.A1_x_at5/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.54691.1.S1_x_at1/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10054Os.27702.2.A1_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.29785.1.S1_s_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.27702.1.S1_x_at10/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.25067.1.S1_at5/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.52634.2.S1_x_at1/119+5470800..5490310NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17627.1.S1_at--242--731Chr09:5446364..5446388 (25 bp)
ATGTTGCAGAACCTCTTAGATTAGA
LOC_Os09g10000
OsAffx.17627.1.S1_at--192--6671Chr09:5446362..5446386 (25 bp)
GTTGCAGAACCTCTTAGATTAGATG
LOC_Os09g10000
OsAffx.17627.1.S1_at--321--10451Chr09:5446349..5446373 (25 bp)
TTAGATTAGATGAAGCAGCCCAGGC
LOC_Os09g10000
OsAffx.17627.1.S1_at--980--6531Chr09:5446346..5446370 (25 bp)
GATTAGATGAAGCAGCCCAGGCAAA
LOC_Os09g10000
OsAffx.17627.1.S1_at--888--10431Chr09:5446344..5446368 (25 bp)
TTAGATGAAGCAGCCCAGGCAAACA
LOC_Os09g10000
OsAffx.17627.1.S1_at--691--5251Chr09:5446106..5446130 (25 bp)
GAATCTGCAAGAAGATTTGACTGAT
LOC_Os09g10000
OsAffx.17627.1.S1_at--1086--5151Chr09:5446100..5446124 (25 bp)
GCAAGAAGATTTGACTGATGAGATT
LOC_Os09g10000
OsAffx.17627.1.S1_at--1136--3471Chr09:5443772..5443796 (25 bp)
CATGTCCAAGCCTAAAACTCTATTT
NONE
OsAffx.17627.1.S1_at--239--8692Chr04:21697986..21698005 (20 bp)
TGTCCAAGCCTAAAACTCTATTTTG
NONE
OsAffx.17627.1.S1_at--348--9551Chr09:5443815..5443839 (25 bp)
TCTATTTTGCCATTTTGCAGGATCT
NONE
OsAffx.17627.1.S1_at--475--171Chr09:5443812..5443836 (25 bp)
ATTTTGCCATTTTGCAGGATCTAAA
NONE
Target Sequence 
ATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATATAGGAATCTGCAAGAAGATTTGACT
GATGAGATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGAT
ACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGGATCTAA
ACAGGGCCTTAATATCCATGTCCAAGCCTAAAACTCTATTTTGCCATTTTGCAGGATCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis