Browse Element(s) Details


OsAffx.17633.1.S1_at

Description tigr:9637.m00811
TID=OsAffx.17633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1052010/11hypothetical protein
LOC_Os12g215605/11retrotransposon protein, putative, unclassified
LOC_Os01g214204/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10450OsAffx.22385.1.S1_x_at4/119+5708713..5711556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10450OsAffx.20329.1.S1_at1/119+5708713..5711556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10460NANA9+5715356..5716923transposon protein, putative, unclassified
LOC_Os09g10470NANA9+5719176..5723690retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10480NANA9+5723945..5725845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10490NANA9+5729148..5730289NA
LOC_Os09g10500NANA9+5730990..5731583retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10510NANA9+5731932..5733125hypothetical protein
LOC_Os09g10520OsAffx.17633.1.S1_at10/119+5733833..5734254hypothetical protein
LOC_Os09g10530OsAffx.31869.1.S1_at7/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.5.S1_x_at5/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.3.S1_s_at2/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.2.S1_at1/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10540Os.45173.1.S1_x_at4/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10540OsAffx.18229.1.S1_x_at1/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10550OsAffx.19720.2.S1_s_at11/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.2.S1_at10/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.1.S1_at6/119+5758676..5760466hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0006376biological_processmRNA splice site selection
GO:0048024biological_processregulation of nuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17633.1.S1_at--399--7231Chr09:5734200..5734224 (25 bp)
GTCCAGTGGCTTCACAAAACCAGCG
LOC_Os09g10520
OsAffx.17633.1.S1_at--431--1711Chr09:5734182..5734206 (25 bp)
ACCAGCGAAGCAATAACAAAGCATT
LOC_Os09g10520
OsAffx.17633.1.S1_at--41--2353Chr12:10126339..10126362 (24 bp)
AAAGCATTGCCTGGACTTACAATTT
NONE
OsAffx.17633.1.S1_at--459--10493Chr12:10126252..10126347 (25 bp)
TTACAATTTTGGACTGCTACTGGAT
NONE
OsAffx.17633.1.S1_at--535--8531NONE
TGGACTGCTACTGGATTTGGTATAA
NONE
OsAffx.17633.1.S1_at--281--9794Chr12:12118485..12118509 (25 bp)
TAAGTCCAATGTTCCATAAGGATAT
LOC_Os12g21560
OsAffx.17633.1.S1_at--972--6615Chr01:11939987..11940011 (25 bp)
GTTGGTAGCTGGTCGAAAATCCATT
LOC_Os01g21420
OsAffx.17633.1.S1_at--758--7216Chr12:19475877..19475901 (25 bp)
GTCGAAAATCCATTATGAAGTTGCA
NONE
OsAffx.17633.1.S1_at--1030--652Chr09:5733884..5733992 (25 bp)
ATGCAAATTGTATGTGCTGTTGGAA
LOC_Os09g10520
OsAffx.17633.1.S1_at--1118--4735Chr01:11940123..11940147 (25 bp)
GCTGTTGGAAGCTATATCTTGGTCA
LOC_Os01g21420
OsAffx.17633.1.S1_at--521--8195Chr01:11940129..11940153 (25 bp)
GGAAGCTATATCTTGGTCATACTGG
LOC_Os01g21420
Target Sequence 
GTCCAGTGGCTTCACAAAACCAGCGAAGCAATAACAAAGCATTGCCTGGACTTACAATTTTGGACTGCTACTGGATTTGG
TATAAGTCCAATGTTCCATAAGGATATAGATCTTGCGGGGTCGGTTGGTAGCTGGTCGAAAATCCATTATGAAGTTGCAA
AATGCAAATTGTATGTGCTGTTGGAAGCTATATCTTGGTCATACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis