Browse Element(s) Details


OsAffx.17666.1.S1_at

Description tigr:9637.m00971
TID=OsAffx.17666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g124809/11hypothetical protein
LOC_Os11g282801/11hypothetical protein
LOC_Os12g273501/11Transferase family protein
LOC_Os05g225201/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g062901/11Zinc knuckle family protein
LOC_Os01g074701/11hypothetical protein
LOC_Os08g067501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12420OsAffx.6251.1.S1_at11/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.18.S1_x_at10/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.3.S1_x_at8/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_at5/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_x_at3/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12430OsAffx.17663.1.S1_at11/119+7115096..7116458hypothetical protein
LOC_Os09g12440OsAffx.29817.1.S1_at11/119+7118890..7119611hypothetical protein
LOC_Os09g12450NANA9+7122716..7123150hypothetical protein
LOC_Os09g12460OsAffx.17665.1.S1_at11/119+7126341..7127357hypothetical protein
LOC_Os09g12470OsAffx.6252.1.S1_at10/119+7128773..7129316hypothetical protein
LOC_Os09g12480OsAffx.17666.1.S1_at9/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.2.S1_a_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.1.S1_x_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.27541.1.A1_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12490Os.54691.1.S1_x_at1/119+7150324..7154338Zinc knuckle family protein
LOC_Os09g12500OsAffx.17667.1.S1_at11/119+7165588..7170330expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17666.1.S1_at--868--2291Chr09:7135599..7135623 (25 bp)
AAATGGCAGTACACGCATATGGCGG
LOC_Os09g12480
OsAffx.17666.1.S1_at--1128--4951NONE
GCATATGGCGGGATGAGCCTTTTTT
NONE
OsAffx.17666.1.S1_at--378--6651Chr09:7134650..7134671 (22 bp)
GTTGATGGGCTTTCTAGGCCCGAAT
LOC_Os09g12480
OsAffx.17666.1.S1_at--1130--10531NONE
TTCTAGGCCCGAATGCCGTACTATT
NONE
OsAffx.17666.1.S1_at--510--9791Chr09:7133720..7133744 (25 bp)
TAAGAGGGATCAACGCCGAGGTGTT
LOC_Os09g12480
OsAffx.17666.1.S1_at--773--7431Chr09:7133370..7133724 (25 bp)
GTGTTTGTTGTTGGCCTCTATCGGC
LOC_Os09g12480
OsAffx.17666.1.S1_at--219--3691Chr09:7133353..7133377 (25 bp)
CTATCGGCTAGCACGACTTGATCTA
LOC_Os09g12480
OsAffx.17666.1.S1_at--260--10851Chr09:7133306..7133330 (25 bp)
TTGGTGCCTTCTGCGTTATATTTTC
LOC_Os09g12480
OsAffx.17666.1.S1_at--955--4734Chr11:19116811..19116835 (25 bp)
ATCTGTGCCCAGAAACGGTTGTTTT
NONE
OsAffx.17666.1.S1_at--181--3971Chr09:7132719..7132743 (25 bp)
CGGTTGTTTTGTCTTATTGTGTGCA
LOC_Os09g12480
OsAffx.17666.1.S1_at--959--7331Chr09:7132699..7132723 (25 bp)
GTGCAGATGGCTTGAGGTCAGCCTT
LOC_Os09g12480
Target Sequence 
AAATGGCAGTACACGCATATGGCGGGATGAGCCTTTTTTTTTCCTTAATGGAGAAGTGGAAGGAAAGCGTATGTACACAA
ATGGTCTGATGGGTGGGGAGCAGTGGGGATCTAGTAGGTTGATGGGCTTTCTAGGCCCGAATGCCGTACTATTAAGAGGG
ATCAACGCCGAGGTGTTTGTTGTTGGCCTCTATCGGCTAGCACGACTTGATCTAGCCAAGGTTTATGGCACAGGAATTGG
TGCCTTCTGCGTTATATTTTCACTGTTGTGCGTAACGTTGTGCACCAACCTATTGCGGAAGATAGTGCAGCACGCGCGTC
CACTGTGGGCTAGGTGTGGTGCCCATGGATTCTTCTGTAGCATTCTGAATGTGCGCAGAGCTCAGAACTACTCTGCCATC
CCGTTGTTGCAGGTTGTGATATCTGTGCCCAGAAACGGTTGTTTTGTCTTATTGTGTGCAGATGGCTTGAGGTCAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis