Browse Element(s) Details


OsAffx.17676.1.S1_at

Description tigr:9637.m01020
TID=OsAffx.17676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g129208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12890OsAffx.22947.1.S1_x_at1/119+7418056..7423674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12900OsAffx.17674.1.S1_at11/119+7428162..7428774hypothetical protein
LOC_Os09g12900Os.52861.1.S1_at3/119+7428162..7428774hypothetical protein
LOC_Os09g12900OsAffx.20015.1.S1_x_at1/119+7428162..7428774hypothetical protein
LOC_Os09g12910OsAffx.17675.1.S1_at11/119+7437727..7438686hypothetical protein
LOC_Os09g12920OsAffx.17676.1.S1_at8/119+7443495..7443965hypothetical protein
LOC_Os09g12930Os.27639.1.S1_x_at9/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12930OsAffx.8980.1.S1_at4/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12940NANA9+7457405..7464079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12950Os.53731.1.S1_at2/119+7466242..7468075retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17676.1.S1_at--1059--3331Chr09:7443424..7443448 (25 bp)
CACGACGGTAAGGTTGGTAGCGCCA
NONE
OsAffx.17676.1.S1_at--993--10791Chr09:7443437..7443461 (25 bp)
TTGGTAGCGCCAGAGAGAGAAGACA
NONE
OsAffx.17676.1.S1_at--1132--8531Chr09:7443496..7443520 (25 bp)
TGGAGAGGCTTTGCCTCGCGGCTCA
LOC_Os09g12920
OsAffx.17676.1.S1_at--732--1831Chr09:7443560..7443584 (25 bp)
ACGCGGCTCCCATCGGCGAAACGAT
LOC_Os09g12920
OsAffx.17676.1.S1_at--953--3931Chr09:7443624..7443648 (25 bp)
CGGCGGCAACTAGAGCTCGGGAAAA
LOC_Os09g12920
OsAffx.17676.1.S1_at--893--4251Chr09:7443663..7443686 (24 bp)
CCGGTGGTGGCTATTTATCGAGGAT
LOC_Os09g12920
OsAffx.17676.1.S1_at--844--511Chr09:7443678..7443702 (25 bp)
ATCGAGGATGATGAGCTAGGGCTAC
LOC_Os09g12920
OsAffx.17676.1.S1_at--325--691Chr09:7443688..7443712 (25 bp)
ATGAGCTAGGGCTACAAGCAGATTT
LOC_Os09g12920
OsAffx.17676.1.S1_at--496--3731Chr09:7443699..7443723 (25 bp)
CTACAAGCAGATTTGGAAGGCGGCG
LOC_Os09g12920
OsAffx.17676.1.S1_at--313--4791NONE
GCTCCGGATTTGTCGGCGCCCTCGA
NONE
OsAffx.17676.1.S1_at--621--5891Chr09:7443907..7443931 (25 bp)
GAGCTTCGGCTCCTGGCCTAAGGAA
LOC_Os09g12920
Target Sequence 
CACGACGGTAAGGTTGGTAGCGCCAGAGAGAGAAGACAAGAGGGAAACAGAGAGGGAACCAGAGCTGGGAGATGGAGAGG
CTTTGCCTCGCGGCTCACCGGCTGTGGCAGCGCCTTCGGGAGGATGGGGCGACGACGACGCGGCTCCCATCGGCGAAACG
ATGAGGCGGCGGCGGCGTTGATTGCGCACGGGTGGAAGTGGCGGCGGCAACTAGAGCTCGGGAAAAGGAAAAGAGAGCGC
CGGTGGTGGCTATTTATCGAGGATGATGAGCTAGGGCTACAAGCAGATTTGGAAGGCGGCGGCTCCGGATTTGTCGGCGC
CCTCGAGGGGATTTGGCGGCAACACGGCGCGGCGCGGCCTCAGGTCGCGACGGTGTGGGCCGAGGGCGGCGGCGTGTGGA
GAAGGAGAGGAGCGGCCGGGACGAGGCGCAGCACGTGGACTCGGGGCTTGGCCTCCCTGGGTCGAGCTGCTCGGGTGGAG
GAGAGAGCTTCGGCTCCTGGCCTAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis