Browse Element(s) Details


OsAffx.17694.1.S1_at

Description tigr:9631.m03713
TID=OsAffx.17694.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3870011/11tropinone reductase homolog At1g07440, putative
LOC_Os09g1457011/11tropinone reductase homolog At1g07440, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38650OsAffx.13237.1.S1_at11/113+21414694..21416201hypothetical protein
LOC_Os03g38660NANA3+21419323..21419778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38670NANA3+21421808..21422323hypothetical protein
LOC_Os03g38680OsAffx.25421.1.S1_at11/113+21429102..21430207hypothetical protein
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein
LOC_Os03g38700OsAffx.17694.1.S1_x_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38700OsAffx.17694.1.S1_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38710OsAffx.25423.2.S1_x_at10/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38710Os.43946.3.S1_x_at7/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38720OsAffx.6272.1.S1_at11/113+21444889..21449811Proteasome maturation factor UMP1 family protein
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed
LOC_Os03g38740Os.50406.1.S1_x_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.1.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.2.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17694.1.S1_at--499--9452Chr09:8628682..8628706 (25 bp)
TCGGCCAGCAAGAGGACCCTCATTA
LOC_Os09g14570
OsAffx.17694.1.S1_at--110--4412Chr09:8628679..8628703 (25 bp)
GCCAGCAAGAGGACCCTCATTACCG
LOC_Os09g14570
OsAffx.17694.1.S1_at--47--1492Chr09:8628676..8628700 (25 bp)
AGCAAGAGGACCCTCATTACCGGCG
LOC_Os09g14570
OsAffx.17694.1.S1_at--215--5172Chr09:8628675..8628699 (25 bp)
GCAAGAGGACCCTCATTACCGGCGA
LOC_Os09g14570
OsAffx.17694.1.S1_at--105--9292Chr09:8628145..8628169 (25 bp)
TCCGGGACCAGCCGGAACGCATGCT
LOC_Os09g14570
OsAffx.17694.1.S1_at--65--4812Chr09:8628090..8628114 (25 bp)
GCTCGACATCCTTGTAAAACACTTC
LOC_Os09g14570
OsAffx.17694.1.S1_at--388--5672Chr09:8628086..8628110 (25 bp)
GACATCCTTGTAAAACACTTCACAG
LOC_Os09g14570
OsAffx.17694.1.S1_at--1041--552Chr09:8628083..8628107 (25 bp)
ATCCTTGTAAAACACTTCACAGCTT
LOC_Os09g14570
OsAffx.17694.1.S1_at--521--10812Chr09:8628079..8628103 (25 bp)
TTGTAAAACACTTCACAGCTTCTCT
LOC_Os09g14570
OsAffx.17694.1.S1_at--276--7052Chr09:8628077..8628101 (25 bp)
GTAAAACACTTCACAGCTTCTCTTC
LOC_Os09g14570
OsAffx.17694.1.S1_at--825--9812Chr09:8628076..8628100 (25 bp)
TAAAACACTTCACAGCTTCTCTTCC
LOC_Os09g14570
Target Sequence 
TCGGCCAGCAAGAGGACCCTCATTACCGGCGACACCTGCNGCTAGGGCGTGCGGTGGTGGACGAGCTGGCGGCGCTGGGG
GCGGCCGTGCATACCTGCTCCAGGAACGAGGCCGAGCTGGGCGAGCGCCTCAGGGAGTGGGAGGGCAGGGGGTTCCGCGT
CACCGGCTCAGTCCGCGACGTCTCCGTCCGGGACCAGCCGGAACGCATGCTCCGCGAGGTCGCCAGCCTCTACGGTGGCA
AGCTCGACATCCTTGTAAAACACTTCACAGCTTCTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis