Browse Element(s) Details


OsAffx.17728.1.S1_at

Description tigr:9637.m01338
TID=OsAffx.17728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1606011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16010OsAffx.6291.1.S1_at11/119+9780579..9782841BURP domain containing protein, expressed
LOC_Os09g16020NANA9+9784871..9785143hypothetical protein
LOC_Os09g16030OsAffx.29866.1.S1_at11/119+9789701..9791206Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os09g16040NANA9+9795728..9797952retrotransposon protein, putative, unclassified
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative
LOC_Os09g16060OsAffx.17728.1.S1_at11/119+9806843..9808072hypothetical protein
LOC_Os09g16070OsAffx.17729.1.S1_at11/119+9809123..9809491expressed protein
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17728.1.S1_at--387--2131Chr09:9807836..9807860 (25 bp)
ACAGGTCAGCAGTCAGTCTTCTTCA
LOC_Os09g16060
OsAffx.17728.1.S1_at--866--5251Chr09:9807805..9807829 (25 bp)
GAATCTGTCACAACTGCAACACTTC
LOC_Os09g16060
OsAffx.17728.1.S1_at--687--6391Chr09:9807776..9807800 (25 bp)
GATCTGCTTCCGGTGCACAAATTTG
LOC_Os09g16060
OsAffx.17728.1.S1_at--1078--371Chr09:9807739..9807763 (25 bp)
ATCAAAGGCTTGATCGGCCGCAACG
LOC_Os09g16060
OsAffx.17728.1.S1_at--187--10651Chr09:9807301..9807325 (25 bp)
TTCGCCGTGCTGACAAGGACATGGT
LOC_Os09g16060
OsAffx.17728.1.S1_at--200--2971Chr09:9807274..9807298 (25 bp)
AATGGCTCATGCTCGTGGATTCAAA
LOC_Os09g16060
OsAffx.17728.1.S1_at--64--2431Chr09:9807252..9807276 (25 bp)
AAAACTGGCTCTTGTTCCGATGGAA
LOC_Os09g16060
OsAffx.17728.1.S1_at--281--8471Chr09:9807208..9807232 (25 bp)
TGGCCGTCTCTCTAGGATATCACGA
LOC_Os09g16060
OsAffx.17728.1.S1_at--583--9771Chr09:9807156..9807180 (25 bp)
TAATGGTTTTGTATCCTACTCCGGA
LOC_Os09g16060
OsAffx.17728.1.S1_at--316--8151Chr09:9807125..9807149 (25 bp)
GGACAAAATGTTCTGCACGCCTCTG
LOC_Os09g16060
OsAffx.17728.1.S1_at--1116--8191Chr09:9806995..9807019 (25 bp)
GGAATAGTCCATTTTTTCTCGGCGC
LOC_Os09g16060
Target Sequence 
ACAGGTCAGCAGTCAGTCTTCTTCACCTGTAGAATCTGTCACAACTGCAACACTTCGTCCGATCTGCTTCCGGTGCACAA
ATTTGATGTACAACGAGATCAAAGGCTTGATCGGCCGCAACGTTGGAGGCGAGGAGGGTCGTTATGCGGAAGATATTAGG
AAGCAGAACGAGAATGGAGAGACGATTTTGCACGAGGCGGTTCGCCGTGCTGACAAGGACATGGTTGAATGGCTCATGCT
CGTGGATTCAAAACTGGCTCTTGTTCCGATGGAAGGCACTTCCCCGTTGTATCTGGCCGTCTCTCTAGGATATCACGACA
TTGCAACGATGATACACACACAAAGTAATGGTTTTGTATCCTACTCCGGACCAAACGGACAAAATGTTCTGCACGCCTCT
GTTCTAAGAAGCGAAGGAATAGTCCATTTTTTCTCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis