Browse Element(s) Details


OsAffx.17734.1.S1_at

Description tigr:9637.m01351
TID=OsAffx.17734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g161909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17734.1.S1_at--765--9051Chr09:9874731..9874755 (25 bp)
TGCATTTTTGCCAACCACCGTCCGC
LOC_Os09g16190
OsAffx.17734.1.S1_at--595--4511Chr09:9874782..9874806 (25 bp)
GCCGACACGCGAACTCGCGATGGGA
LOC_Os09g16190
OsAffx.17734.1.S1_at--291--2551Chr09:9874793..9874817 (25 bp)
AACTCGCGATGGGAGCGGCCGGAAA
LOC_Os09g16190
OsAffx.17734.1.S1_at--463--5991Chr09:9874826..9874850 (25 bp)
GAGACTCATGGTGGGAGCGGCCAGA
LOC_Os09g16190
OsAffx.17734.1.S1_at--766--8511Chr09:9874866..9874890 (25 bp)
TGGAAGGCGGCCTGGTTCATCGCCT
LOC_Os09g16190
OsAffx.17734.1.S1_at--203--911Chr09:9874870..9874894 (25 bp)
AGGCGGCCTGGTTCATCGCCTTGGA
LOC_Os09g16190
OsAffx.17734.1.S1_at--160--8391Chr09:9874874..9874898 (25 bp)
GGCCTGGTTCATCGCCTTGGACTTC
LOC_Os09g16190
OsAffx.17734.1.S1_at--857--2051NONE
ACTTCTCCAGCGCTGCAACAAGGAC
NONE
OsAffx.17734.1.S1_at--786--1651NONE
AGCGCTGCAACAAGGACCGATCCAA
NONE
OsAffx.17734.1.S1_at--941--2171Chr09:9875554..9875574 (21 bp)
ACAAGGACCGATCCAAGCTGCTACT
LOC_Os09g16190
OsAffx.17734.1.S1_at--294--1451Chr09:9875586..9875610 (25 bp)
AGAAGAAAGCTGATGGCGGTGACCG
LOC_Os09g16190
Target Sequence 
TGCATTTTTGCCAACCACCGTCCGCCGGCATTGGGCGGAGCCGCGCTCCTCGCCGACACGCGAACTCGCGATGGGAGCGG
CCGGAAAGGAAAGGGGAGACTCATGGTGGGAGCGGCCAGAAGGAAAGGGGAGAAGTGGAAGGCGGCCTGGTTCATCGCCT
TGGACTTCTCCAGCGCTGCAACAAGGACCGATCCAAGCTGCTACTGCGGCGGGAGGAGAAGAAAGCTGATGGCGGTGACC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis