Browse Element(s) Details


OsAffx.17852.1.S1_at

Description tigr:9632.m02350
TID=OsAffx.17852.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1186011/11hypothetical protein
LOC_Os04g2511011/11hypothetical protein
LOC_Os09g2324010/11hypothetical protein
LOC_Os03g429602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11830OsAffx.19407.1.S1_at11/119+6630460..6632006hypothetical protein
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17852.1.S1_at--1--133Chr09:6647425..6647449 (25 bp)
ATAGACCATTGGTACGTAGCGGTTC
LOC_Os09g11860
OsAffx.17852.1.S1_at--576--9933Chr09:6647437..6647461 (25 bp)
TACGTAGCGGTTCTGGACTGTACCA
LOC_Os09g11860
OsAffx.17852.1.S1_at--1139--6913Chr09:6647661..6647685 (25 bp)
GTAGAGAACCCTCTGTGGGACGATT
LOC_Os09g11860
OsAffx.17852.1.S1_at--30--7633Chr09:6647677..6647701 (25 bp)
GGGACGATTACAATGTTCAAGCTTG
LOC_Os09g11860
OsAffx.17852.1.S1_at--899--2753Chr09:6647822..6647843 (22 bp)
AAGACAGGACATCCAGTGGGCTTTA
LOC_Os09g11860
OsAffx.17852.1.S1_at--433--7473Chr09:6647834..6647858 (25 bp)
GTGGGCTTTACTCAATCAAGTTCAT
LOC_Os09g11860
OsAffx.17852.1.S1_at--266--5634Chr09:6647991..6648015 (25 bp)
GACAGCTACAGGAGAAAACTTGCAG
LOC_Os09g11860
OsAffx.17852.1.S1_at--739--5054Chr09:6648012..6648036 (25 bp)
GCAGCAATCTTGTACATGTCTCCGT
LOC_Os09g11860
OsAffx.17852.1.S1_at--717--10793Chr09:6648021..6648045 (25 bp)
TTGTACATGTCTCCGTCAAACAAGC
LOC_Os09g11860
OsAffx.17852.1.S1_at--974--9353Chr09:6648047..6648071 (25 bp)
TCGAAACAATATCTGTTCTACCTCA
LOC_Os09g11860
OsAffx.17852.1.S1_at--605--5452Chr09:6648094..6648160 (25 bp)
GAACTAGGGCGGCAGACCTCAATGA
LOC_Os09g11860
Target Sequence 
ATAGACCATTGGTACGTAGCGGTTCTGGACTGTACCAGAAAGGAGGTGTGTGTCCTTGACTCAATGGACACGACTGAAGA
TGACTTGAAAGAACTTAAGTTTCTGATGAAAGGCATCCGCAAATGTGTCCGACTTGTCCTCGATGATAAAATAGTAGAGA
ACCCTCTGTGGGACGATTACAATGTTCAAGCTTGGAAAATCAGGATTAGATATAACTTGCCTAACAAAAAAGACAGGACA
TCCAGTGGGCTTTACTCAATCAAGTTCATGGAGTTATGGACAGGAGATTCNCTAAGCAAACAATTTTATCAGGAAGACAT
AGACAGCTACAGGAGAAAACTTGCAGCAATCTTGTACATGTCTCCGTCAAACAAGCTTCGAAACAATATCTGTTCTACCT
CAAACGGAAATGGTACTGATGGAGGAACTAGGGCGGCAGACCTCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis