Browse Element(s) Details


OsAffx.17864.1.S1_at

Description tigr:9637.m02034
TID=OsAffx.17864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylinositol-4-phosphate 5-Kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g237408/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17864.1.S1_at--619--2731Chr09:14111176..14111200 (25 bp)
AAGAATGGAAAGAGCTGTCTGGAAC
LOC_Os09g23740
OsAffx.17864.1.S1_at--329--5571Chr09:14111169..14111193 (25 bp)
GAAAGAGCTGTCTGGAACGATACAT
LOC_Os09g23740
OsAffx.17864.1.S1_at--281--1371Chr09:14111166..14111190 (25 bp)
AGAGCTGTCTGGAACGATACATCAT
LOC_Os09g23740
OsAffx.17864.1.S1_at--467--1611Chr09:14111164..14111188 (25 bp)
AGCTGTCTGGAACGATACATCATTC
LOC_Os09g23740
OsAffx.17864.1.S1_at--886--7171Chr09:14111160..14111184 (25 bp)
GTCTGGAACGATACATCATTCCTTG
LOC_Os09g23740
OsAffx.17864.1.S1_at--718--8511Chr09:14111158..14111181 (24 bp)
TGGAACGATACATCATTCCTTGCGT
LOC_Os09g23740
OsAffx.17864.1.S1_at--222--5451Chr09:14111158..14111179 (22 bp)
GAACGATACATCATTCCTTGCGTCA
LOC_Os09g23740
OsAffx.17864.1.S1_at--344--1891Chr09:14111158..14111177 (20 bp)
ACGATACATCATTCCTTGCGTCATT
LOC_Os09g23740
OsAffx.17864.1.S1_at--715--6471NONE
GATACATCATTCCTTGCGTCATTGG
NONE
OsAffx.17864.1.S1_at--831--331NONE
ATACATCATTCCTTGCGTCATTGGA
NONE
OsAffx.17864.1.S1_at--664--2091NONE
ACATCATTCCTTGCGTCATTGGACG
NONE
Target Sequence 
AAGAATGGAAAGAGCTGTCTGGAACGATACATCATTCCTTGCGTCATTGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis