Browse Element(s) Details


OsAffx.17912.1.S1_at

Description tigr:9637.m02314
TID=OsAffx.17912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2652011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17912.1.S1_at--341--2751Chr09:16025275..16025299 (25 bp)
AAGACTGGCTCCACTAACCTGGGAA
LOC_Os09g26520
OsAffx.17912.1.S1_at--431--8651Chr09:16025294..16025318 (25 bp)
TGGGAAGTTTCTTCGGCTCTGTCAC
LOC_Os09g26520
OsAffx.17912.1.S1_at--717--2591Chr09:16025886..16025910 (25 bp)
AACGAGGCAGCTCTTGTCGGAAAAC
LOC_Os09g26520
OsAffx.17912.1.S1_at--435--8931Chr09:16025941..16025965 (25 bp)
TGACTGTCAACGCTGATTACTCCGG
LOC_Os09g26520
OsAffx.17912.1.S1_at--578--8391Chr09:16025982..16026006 (25 bp)
GGCGCACCTGTTTTTAGAGGCGAAA
LOC_Os09g26520
OsAffx.17912.1.S1_at--1084--8631Chr09:16026019..16026043 (25 bp)
TGGGCACTAATGTTCACGGTGGCAA
LOC_Os09g26520
OsAffx.17912.1.S1_at--719--2791Chr09:16026043..16026067 (25 bp)
AAGAGGTCTTGTGCTTTGTCACGGT
LOC_Os09g26520
OsAffx.17912.1.S1_at--858--5671Chr09:16026783..16026805 (23 bp)
GACTTGGACCGAATGCAACCATTGA
LOC_Os09g26520
OsAffx.17912.1.S1_at--265--8211Chr09:16026815..16026839 (25 bp)
GGAATCATGCTTCGCTTTGCTTAAA
LOC_Os09g26520
OsAffx.17912.1.S1_at--473--5411Chr09:16026846..16026870 (25 bp)
GAAGCTGGCCCATCATCAAGGATCA
LOC_Os09g26520
OsAffx.17912.1.S1_at--886--10511Chr09:16027531..16027555 (25 bp)
TTCAGAGTACGTAGTTCCCGAACAT
LOC_Os09g26520
Target Sequence 
AAGACTGGCTCCACTAACCTGGGAAGTTTCTTCGGCTCTGTCACCAACGAGGCAGCTCTTGTCGGAAAACTGAAAGACAC
CCCTCCCGAAGAACACATGATGACTGTCAACGCTGATTACTCCGGTGCAGGCGGGTCATCAGGCGCACCTGTTTTTAGAG
GCGAAAATGGCAAGGTTGTGGGCACTAATGTTCACGGTGGCAAAGAGGTCTTGTGCTTTGTCACGGTGAGCTGGATTCAG
GATACACTGAGGAATTTACAGGAGGTCAAAAAGTCCGGACTTGGACCGAATGCAACCATTGAGGAGATTCTGGAATCATG
CTTCGCTTTGCTTAAAAGCGACGAAGCTGGCCCATCATCAAGGATCACCAGGAGATTTTATTTAGAATGTATCAGAGATT
CAGAGTACGTAGTTCCCGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis