Browse Element(s) Details


OsAffx.17936.1.S1_s_at

Description tigr:9637.m02424
TID=OsAffx.17936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2762011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA
LOC_Os09g27610Os.56297.1.S1_at7/119+16780151..16783470hypothetical protein
LOC_Os09g27620OsAffx.17936.1.S1_s_at11/119+16785040..16787398PHD-finger family protein, expressed
LOC_Os09g27630OsAffx.30061.2.S1_at8/119+16791513..16794853hypothetical protein
LOC_Os09g27630OsAffx.30061.3.S1_at2/119+16791513..16794853hypothetical protein
LOC_Os09g27630Os.9329.1.S1_at1/119+16791513..16794853hypothetical protein
LOC_Os09g27640NANA9+16798951..16800494hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007140biological_processmale meiosis
GO:0009556biological_processmicrosporogenesis
GO:0009846biological_processpollen germination
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17936.1.S1_s_at--105--5891Chr09:16787111..16787135 (25 bp)
GAGCGCATGGCGTGCTGCGACATCT
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--148--7151Chr09:16787195..16787219 (25 bp)
GTCTTCCTCTGCAGCCGGTGCGACA
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--1101--1671Chr09:16787207..16787231 (25 bp)
AGCCGGTGCGACAACGACGTCGTGT
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--446--6671Chr09:16787233..16787257 (25 bp)
GTTCCCGTCCTTCAACTGTTAGATG
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--239--3651Chr09:16787242..16787266 (25 bp)
CTTCAACTGTTAGATGTGATGCTGC
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--120--1993Chr09:16787274..16787298 (25 bp)
ACTGCTACTACTACTGCCTCTGCTG
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--902--9911Chr09:16787285..16787309 (25 bp)
TACTGCCTCTGCTGCTATATATGAT
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--986--3831Chr09:16787293..16787317 (25 bp)
CTGCTGCTATATATGATGCTACCTA
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--253--9071Chr09:16787309..16787333 (25 bp)
TGCTACCTAGTACAAGTGATCGAGA
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--925--5211Chr09:16787332..16787356 (25 bp)
GAATTCAATTTGTTTTCTCGGCAAA
LOC_Os09g27620
OsAffx.17936.1.S1_s_at--1091--8771Chr09:16787342..16787366 (25 bp)
TGTTTTCTCGGCAAAACCAAAATGA
LOC_Os09g27620
Target Sequence 
GAGCGCATGGCGTGCTGCGACATCTGCGAGGCGTGGCAGCACACGCGGTGCGCCGGGATCGCGGACACCGAGGACGCGCC
GCACGTCTTCCTCTGCAGCCGGTGCGACAACGACGTCGTGTCGTTCCCGTCCTTCAACTGTTAGATGTGATGCTGCTGCT
GCTACTGCTACTACTACTGCCTCTGCTGCTATATATGATGCTACCTAGTACAAGTGATCGAGAATTCAATTTGTTTTCTC
GGCAAAACCAAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17936.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis