Browse Element(s) Details


OsAffx.17954.1.S1_at

Description tigr:9637.m02538
TID=OsAffx.17954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2882011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17954.1.S1_at--187--5031Chr09:17502832..17503149 (25 bp)
GCAGTGTGAAGCAATCCTTGGCCTT
LOC_Os09g28820
OsAffx.17954.1.S1_at--352--2751Chr09:17502802..17502826 (25 bp)
AAGACAGATGTTCTATTGCACCCAT
LOC_Os09g28820
OsAffx.17954.1.S1_at--652--5091Chr09:17502785..17502809 (25 bp)
GCACCCATCTGAATTTTCCTGTGAT
LOC_Os09g28820
OsAffx.17954.1.S1_at--605--10652Chr09:17502770..17502794 (25 bp)
TTCCTGTGATGTTGGCTACCTGTTC
LOC_Os09g28820
OsAffx.17954.1.S1_at--702--9531Chr09:17502747..17502771 (25 bp)
TCTTTGAAATCTTACTTCCTTTGGT
LOC_Os09g28820
OsAffx.17954.1.S1_at--74--4991Chr09:17502713..17502737 (25 bp)
GCAGTATCCATACAGGGTCTACCGT
LOC_Os09g28820
OsAffx.17954.1.S1_at--1135--7791Chr09:17502698..17502722 (25 bp)
GGTCTACCGTTCGAGTTGAGCACTT
LOC_Os09g28820
OsAffx.17954.1.S1_at--78--10671Chr09:17502675..17502699 (25 bp)
TTCCTGCTCCTCAGATCTAATGGGA
LOC_Os09g28820
OsAffx.17954.1.S1_at--752--1391Chr09:17502651..17502675 (25 bp)
AGACTCCGTGGAATCATTGTGTTGA
LOC_Os09g28820
OsAffx.17954.1.S1_at--401--6651Chr09:17502631..17502655 (25 bp)
GTTGAGTCCGATGATGCCTACACCA
LOC_Os09g28820
OsAffx.17954.1.S1_at--122--10451Chr09:17502587..17502611 (25 bp)
TTACCTCCAATTTGTGCCATTTCTG
LOC_Os09g28820
Target Sequence 
GCAGTGTGAAGCAATCCTTGGCCTTCTGCAAAGACAGATGTTCTATTGCACCCATCTGAATTTTCCTGTGATGTTGGCTA
CCTGTTCTTTGAAATCTTACTTCCTTTGGTTTCAAAATAGCAGTATCCATACAGGGTCTACCGTTCGAGTTGAGCACTTC
CTGCTCCTCAGATCTAATGGGAGACTCCGTGGAATCATTGTGTTGAGTCCGATGATGCCTACACCAAAATCTACGGCTCA
GCAACTTACCTCCAATTTGTGCCATTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis