Browse Element(s) Details


OsAffx.17959.1.S1_at

Description tigr:9637.m02572
TID=OsAffx.17959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein
LOC_Os09g29120Os.49550.1.S1_at11/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29120OsAffx.2325.1.A1_at2/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29130Os.57566.1.S1_at9/119+17702753..17704610ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17959.1.S1_at--119--4351Chr09:17684257..17684281 (25 bp)
CCAGTGTCAATGCAGGCGCCGCCGA
LOC_Os09g29110
OsAffx.17959.1.S1_at--798--9351Chr09:17684118..17684142 (25 bp)
TCGACGGCTCTCAAACAACACCGGG
LOC_Os09g29110
OsAffx.17959.1.S1_at--207--10711Chr09:17684059..17684083 (25 bp)
TTGCGGCCGCTGACTTCGAGCAGGT
LOC_Os09g29110
OsAffx.17959.1.S1_at--114--9371Chr09:17684044..17684068 (25 bp)
TCGAGCAGGTGGACCAGTTTACGTG
LOC_Os09g29110
OsAffx.17959.1.S1_at--1021--4251Chr09:17684033..17684057 (25 bp)
GACCAGTTTACGTGCGGCGGGTTCT
LOC_Os09g29110
OsAffx.17959.1.S1_at--730--4671Chr09:17684017..17684041 (25 bp)
GCGGGTTCTCGTTGACGATGGCGAT
LOC_Os09g29110
OsAffx.17959.1.S1_at--180--8051Chr09:17683973..17683997 (25 bp)
GGAGAGTCGGTTTGCGCCATCGACA
LOC_Os09g29110
OsAffx.17959.1.S1_at--518--6851Chr09:17683964..17683988 (25 bp)
GTTTGCGCCATCGACAGCGAGGAAG
LOC_Os09g29110
OsAffx.17959.1.S1_at--271--6231Chr09:17683899..17683923 (25 bp)
GAGGCCAGCGAGAATTAGATCCCGT
LOC_Os09g29110
OsAffx.17959.1.S1_at--233--3131Chr09:17683887..17683911 (25 bp)
AATTAGATCCCGTCGTCGCCTCATG
LOC_Os09g29110
OsAffx.17959.1.S1_at--354--511Chr09:17683834..17683858 (25 bp)
ATCGTCGCGTGAAACGGTGGCACCG
LOC_Os09g29110
Target Sequence 
CCAGTGTCAATGCAGGCGCCGCCGACCCTACCGGCCGTCGCCTTCCCTGCCAGCCGTCGTCGCCCCTGCAGGCCGCCATC
GCCTTCCTTCTTCGGCGTCGGCCATCGGCGCAGCTCGACAACGAGGACGACGGGGCGGCTCGACGGCTCTCAAACAACAC
CGGGGCAGAGCTCGTCATGGCCGACGCCGCTGTGCCCCTTGCGGCCGCTGACTTCGAGCAGGTGGACCAGTTTACGTGCG
GCGGGTTCTCGTTGACGATGGCGATGAATCACCTCCTCGCCGGGGGAGAGTCGGTTTGCGCCATCGACAGCGAGGAAGGG
AGGGCACGACGGTCGGGATGGAGGGCATGGCGGCGAGGGAGGCCAGCGAGAATTAGATCCCGTCGTCGCCTCATGCGCCT
GTCGTCGTCGTCTGGCGCTGGCCATCGTCGCGTGAAACGGTGGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis