Browse Element(s) Details


OsAffx.18071.1.S1_at

Description tigr:9638.m00056
TID=OsAffx.18071.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative bHLH transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0153011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01500OsAffx.6545.1.S1_at11/1110+305210..305559expressed protein
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18071.1.S1_at--1104--7771Chr10:330262..330286 (25 bp)
GGTCCCATGACAAAATTCTGCTCGC
LOC_Os10g01530
OsAffx.18071.1.S1_at--791--1071Chr10:330316..330340 (25 bp)
AGGGCGACCTCGAGCATGCAAGAAC
LOC_Os10g01530
OsAffx.18071.1.S1_at--545--6331Chr10:330372..330396 (25 bp)
GATGCACCAGCAGTTTACAACTCTA
LOC_Os10g01530
OsAffx.18071.1.S1_at--805--2751Chr10:330762..330785 (24 bp)
AAGACGGACAAGGTCTCCGTTCTCG
LOC_Os10g01530
OsAffx.18071.1.S1_at--382--6731Chr10:330779..330803 (25 bp)
GTTCTCGGCAGCACCATTGAGTATG
LOC_Os10g01530
OsAffx.18071.1.S1_at--839--6051Chr10:330797..330821 (25 bp)
GAGTATGTGCACCATCTTAGGGAGA
LOC_Os10g01530
OsAffx.18071.1.S1_at--100--1291Chr10:330828..330852 (25 bp)
AGATCCTGCAGGACATCCAAAGCAT
LOC_Os10g01530
OsAffx.18071.1.S1_at--161--1971Chr10:330974..330998 (25 bp)
ACTGTTCTGCTGAGGGTTGTGTGCC
LOC_Os10g01530
OsAffx.18071.1.S1_at--1049--8831Chr10:331017..331041 (25 bp)
TGATCAAGCTGCTGACCGAGCTCGA
LOC_Os10g01530
OsAffx.18071.1.S1_at--410--6631Chr10:331073..331097 (25 bp)
GTTGTGCCATTTGCAGATTCATCAC
LOC_Os10g01530
OsAffx.18071.1.S1_at--954--631Chr10:331789..331813 (25 bp)
ATGCATCTTGTACCACTGTAGAACT
LOC_Os10g01530
Target Sequence 
GGTCCCATGACAAAATTCTGCTCGCCGCTGTCAGAGATGAAGAGAGGCGGAAGGAGGGCGACCTCGAGCATGCAAGAACA
TGTTATCGCCGAGAGAAAGAGGCGAGAGAAGATGCACCAGCAGTTTACAACTCTAGCATCTATCGTCCCCGAAATCACTA
AGACGGACAAGGTCTCCGTTCTCGGCAGCACCATTGAGTATGTGCACCATCTTAGGGAGAGGGTGAAGATCCTGCAGGAC
ATCCAAAGCATGGGGAGCACGCAACCCCCAATTTCCGATGCTCGCAGCCGTGCCGGCTCCGGTGATGATGAGGACGATGA
TGGTAACAACAATGAGGTGGAGATAAAAGTTGAGGCAAATTTACAGGGGACGACTGTTCTGCTGAGGGTTGTGTGCCCTG
AGAAGAAGGGGGTGTTGATCAAGCTGCTGACCGAGCTCGAGAAGCTCGGCCTGTCCACCATGAACACTAATGTTGTGCCA
TTTGCAGATTCATCACTAAACATCACCATTACAGCACAGATTGATAATGCATCTTGTACCACTGTAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis