Browse Element(s) Details


OsAffx.18079.1.S1_at

Description tigr:9638.m00087
TID=OsAffx.18079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0184011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01790OsAffx.8572.1.S1_s_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01790OsAffx.8572.1.S1_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01800OsAffx.30234.1.S1_at11/1110+510294..511478Transferase family protein
LOC_Os10g01810OsAffx.6549.1.S1_at11/1110+512470..512873hypothetical protein
LOC_Os10g01820Os.54284.1.A1_at11/1110+513590..517749expressed protein
LOC_Os10g01820Os.14574.1.S1_at1/1110+513590..517749expressed protein
LOC_Os10g01830OsAffx.8570.1.S1_at10/1110+520105..522173hypothetical protein
LOC_Os10g01840OsAffx.18079.1.S1_at11/1110+525039..526779hypothetical protein
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18079.1.S1_at--1110--5651Chr10:525787..525811 (25 bp)
GACATAGGAGTTTTTATTTTGCCAG
LOC_Os10g01840
OsAffx.18079.1.S1_at--1009--151Chr10:525802..525826 (25 bp)
ATTTTGCCAGATGAATTTTGTGCCA
LOC_Os10g01840
OsAffx.18079.1.S1_at--537--5931Chr10:525838..525862 (25 bp)
GAGCAGCAAGACGATAGGGCACGAA
LOC_Os10g01840
OsAffx.18079.1.S1_at--183--7612Chr10:525854..525878 (25 bp)
GGGCACGAAACCTTGAGAACACGGA
LOC_Os10g01840
OsAffx.18079.1.S1_at--502--7631Chr10:525901..525925 (25 bp)
GGGACGAACCAAGATATCATTCAAG
LOC_Os10g01840
OsAffx.18079.1.S1_at--1150--7032Chr10:525925..525949 (25 bp)
GTAAATAAATCTCCATGCTTCTCCA
LOC_Os10g01840
OsAffx.18079.1.S1_at--828--4331Chr10:525937..525961 (25 bp)
CCATGCTTCTCCAACACGTCAGATA
LOC_Os10g01840
OsAffx.18079.1.S1_at--661--7491Chr10:526632..526656 (25 bp)
GTGGTCTAGCAGACAGAAGTCTTCA
LOC_Os10g01840
OsAffx.18079.1.S1_at--56--2851Chr10:526648..526672 (25 bp)
AAGTCTTCAGCATGGGTAGGAGGTA
LOC_Os10g01840
OsAffx.18079.1.S1_at--370--7091Chr10:526712..526736 (25 bp)
GTCAAGACATGGGTTTAGCTGCACA
LOC_Os10g01840
OsAffx.18079.1.S1_at--133--7871Chr10:526723..526747 (25 bp)
GGTTTAGCTGCACATGATTTACAAG
LOC_Os10g01840
Target Sequence 
GACATAGGAGTTTTTATTTTGCCAGATGAATTTTGTGCCAAGGAAGTTGATGAGCAGCAAGACGATAGGGCACGAAACCT
TGAGAACACGGAGGAGATGTTGGAGGGTCATAAGGGGACGAACCAAGATATCATTCAAGTAAATAAATCTCCATGCTTCT
CCAACACGTCAGATAAGAAAATACAATCGGCTAATAATGAAGGCCGATTACATTTTGCAACTCCAAGAAAGTCATATGCC
AAGGATAACCGTTTTGATAAAAGAAATCGGTCTAGGTGGTCTAGCAGACAGAAGTCTTCAGCATGGGTAGGAGGTAGTTC
AATAAGGAAGCAAATCTGGGTGCTGAAGTCTAGAGGTCAAGACATGGGTTTAGCTGCACATGATTTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis