Browse Element(s) Details


OsAffx.18124.1.S1_at

Description tigr:9638.m00349
TID=OsAffx.18124.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0440011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18124.1.S1_at--595--8391Chr10:2064685..2064709 (25 bp)
GGCGCTGGAGTACGCGGCCAAGCAG
LOC_Os10g04400
OsAffx.18124.1.S1_at--648--8231Chr10:2064785..2064809 (25 bp)
GGCAACATGCTCGTGCCGCAGATCG
LOC_Os10g04400
OsAffx.18124.1.S1_at--429--631Chr10:2064791..2064815 (25 bp)
ATGCTCGTGCCGCAGATCGCCGAGG
LOC_Os10g04400
OsAffx.18124.1.S1_at--133--4691Chr10:2064928..2064952 (25 bp)
GCGGCGTAGTCGGCCGTTCTTCAAC
LOC_Os10g04400
OsAffx.18124.1.S1_at--700--7551Chr10:2064984..2065008 (25 bp)
GTGGCCTTGGCCGTAGCATGGGCGA
LOC_Os10g04400
OsAffx.18124.1.S1_at--933--1531Chr10:2064998..2065022 (25 bp)
AGCATGGGCGAAGCGGCCACTGCCA
LOC_Os10g04400
OsAffx.18124.1.S1_at--48--3351Chr10:2065057..2065081 (25 bp)
CACGGCGGCCGGACAGGTGATTGCG
LOC_Os10g04400
OsAffx.18124.1.S1_at--742--7751Chr10:2065072..2065096 (25 bp)
GGTGATTGCGGCGAGCCTATATAGC
LOC_Os10g04400
OsAffx.18124.1.S1_at--499--10711Chr10:2065077..2065101 (25 bp)
TTGCGGCGAGCCTATATAGCTGCTA
LOC_Os10g04400
OsAffx.18124.1.S1_at--198--8391Chr10:2065081..2065105 (25 bp)
GGCGAGCCTATATAGCTGCTATGAG
LOC_Os10g04400
OsAffx.18124.1.S1_at--1089--10171Chr10:2065091..2065115 (25 bp)
TATAGCTGCTATGAGAGGTGCAGGC
LOC_Os10g04400
Target Sequence 
GGCGCTGGAGTACGCGGCCAAGCAGCGCGTGCGCGTCCTGGTCATGTCGAGCGCGCGCTGGAGCTGGAAGCGCGACCCGC
CGCTACCACGCGGCTTCTACGGCAACATGCTCGTGCCGCAGATCGCCGAGGCCACCGTCGGCGAGCTGTGCGGCTTGCCA
CTCGCCCACGCGGTGGAGCTCGTGAGGAGGAGGAAGTTCGCCGTGACGGACGAGTACATGCGGTCCATGCTCGACATGCT
GGCGCGGCGTAGTCGGCCGTTCTTCAACCTAGACTGGACGTTCGTGGTGGCTGACGCCGGTGGCCTTGGCCGTAGCATGG
GCGAAGCGGCCACTGCCACGGTCGGCAGGTGGGAGCGTGTTGGGGGCGGCATCACGGCGGCCGGACAGGTGATTGCGGCG
AGCCTATATAGCTGCTATGAGAGGTGCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis