Browse Element(s) Details


OsAffx.18125.1.S1_at

Description tigr:9638.m00350
TID=OsAffx.18125.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0441010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18125.1.S1_at--849--3791Chr10:2069591..2069615 (25 bp)
CTCGCTGCCAAGTGCTTCAAGGGAC
LOC_Os10g04410
OsAffx.18125.1.S1_at--886--1111Chr10:2069601..2069624 (24 bp)
AGTGCTTCAAGGGACCAGCAACAAA
LOC_Os10g04410
OsAffx.18125.1.S1_at--436--9711NONE
TCAAGGGACCAGCAACAAAGAGGAA
NONE
OsAffx.18125.1.S1_at--305--7731Chr10:2070717..2070741 (25 bp)
GGTGTTGCTGGCTAGGAGGAGAACT
LOC_Os10g04410
OsAffx.18125.1.S1_at--516--851Chr10:2070753..2070777 (25 bp)
ATGGCGGCTTCGCTCCAAGACTACA
LOC_Os10g04410
OsAffx.18125.1.S1_at--596--4131Chr10:2070763..2070787 (25 bp)
CGCTCCAAGACTACAGGCGATGGTG
LOC_Os10g04410
OsAffx.18125.1.S1_at--751--931Chr10:2070794..2070818 (25 bp)
AGGCAGCGGGCAAAAGCAGTGTTGT
LOC_Os10g04410
OsAffx.18125.1.S1_at--953--991Chr10:2070829..2070853 (25 bp)
AGGATGTGTGGCAGCGGTGTGACGC
LOC_Os10g04410
OsAffx.18125.1.S1_at--204--5291Chr10:2070867..2070891 (25 bp)
GAAGGCACGGTTGCAGTGGACAGAA
LOC_Os10g04410
OsAffx.18125.1.S1_at--1000--8491Chr10:2070883..2070907 (25 bp)
TGGACAGAAGGGTCGCTACGGGCAA
LOC_Os10g04410
OsAffx.18125.1.S1_at--1146--9331Chr10:2070895..2070919 (25 bp)
TCGCTACGGGCAAGGAGCGAAGTAT
LOC_Os10g04410
Target Sequence 
CTCGCTGCCAAGTGCTTCAAGGGACCAGCAACAAAGAGGAAGAGGAAAGGGAGAGAGCCGAGAGAGGAGGAGGTGTTGCT
GGCTAGGAGGAGAACTGGGGACGGCGCATGGCGGCTTCGCTCCAAGACTACAGGCGATGGTGGAGCGAAGGCAGCGGGCA
AAAGCAGTGTTGTGGGGGCGAGGAGGATGTGTGGCAGCGGTGTGACGCTGTGGGGCGAGGAGAAGGCACGGTTGCAGTGG
ACAGAAGGGTCGCTACGGGCAAGGAGCGAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis